LOCUS       XM_004542930            1847 bp    mRNA    linear   VRT 24-APR-2018
DEFINITION  PREDICTED: Maylandia zebra vimentin (vim), mRNA.
ACCESSION   XM_004542930
VERSION     XM_004542930.1
DBLINK      BioProject: PRJNA198780
KEYWORDS    RefSeq.
SOURCE      Maylandia zebra (zebra mbuna)
  ORGANISM  Maylandia zebra
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
            Maylandia; Maylandia zebra complex.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_020192527.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Maylandia zebra Annotation Release
                                           104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Maylandia zebra"
                     /mol_type="mRNA"
                     /isolate="#2_Kocher and #3_Kocher"
                     /db_xref="taxon:106582"
                     /chromosome="Unknown"
                     /sex="pooled male and female"
                     /dev_stage="adult"
                     /ecotype="Mazinzi reef"
     gene            1..1847
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 64 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101473180"
     CDS             85..1452
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_004542987.1"
                     /db_xref="GeneID:101473180"
                     /translation="

MAYRSGPHSSYRKMFGGEKTAVRSSYSSRQFSIPVRSSRVSFGLSSTPTIYASKTQRLRSSAAMPRLASENLDFSLSDAINTEFITNRTNEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEISQREESEANMQGFRQDVDNAALARLDLERKVESLQEEINFLKKLHDEEMLELQNQIQQQQHVQVDMDIAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAARNNEALRVAKQESNDYRRQVQALTCEVDALKGTNESLERQMREVEENFSLETSGYQDTISRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMVESKPLIETTTTKKVLIKTIETRDGQVINESTQNHDDMD"

     misc_feature    106..351
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    352..1281
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

ccaggcgctcttcgcagatgctgatagaaacaagatatattccagatcggcgacagtgctctagtacttaaatacacaaacaagatggcctatagatcaggtccacattcctcttaccgaaagatgttcggcggggagaaaaccgccgttaggtccagctactcgagccgccagttttcgatcccggtgcgctcatcccgggtttccttcgggctctcctccaccccgaccatatacgcgtcgaagacccagaggctccggagcagtgcagccatgccccggctggcatccgagaacttggacttctccttgtctgacgccataaacaccgaattcatcacgaaccgcaccaacgagaaggcgcagatgcagtccctcaatgaccgcttcgccaactacatcgagaaggttcgcttcttggagcagcaaaataagatcttgctggcggagctggagcagctgcggggcaaagggacgtcccgggtcggagatctttacgaggacgagatgagggagctgagacgccaggtggaccagctcaccaacgaaaaggcccgcgtggaagttcaccgggataacctggcggacgacatcgacaggctgagagagaagttgcaggatgaaatttcccagcgggaggagtctgaggcaaacatgcagggctttagacaggatgtagacaacgctgccctcgccagactggacctggagcggaaagtggagtcactccaagaggaaatcaacttcctcaagaagctgcatgatgaggaaatgttggagctgcagaatcagatccagcagcagcagcatgtgcaggtggacatggatatagctaagcctgacctgacagcggctctgagggacgtccgtctgcagtatgagaacctggcctccaaaaacatccaggaatcagaggaatggtacaaatccaagtttgctgacctcactgaagctgcagccaggaataatgaagctctgagagtggccaaacaggagtccaatgattacagacgccaagttcaggcacttacttgtgaagtggatgccctgaaaggaactaatgagtccttggagcgccagatgagggaggtggaggagaacttctccttggagacgagtgggtaccaggacaccatcagccgtcttgaggaggacattcacaacatgaaggatgagatggctcgtcacctccgcgagtaccaggacttgctaaatgtcaagatggctctggacattgagattgccacctatagaaagctgctggaaggagaggagagcagaatctccacccccttgccaaacttctcatcgcttaacctgagagaaacaatggttgaatccaaaccacttatcgaaaccacaacaaccaagaaagttctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcgacccagaaccacgatgacatggactaataatgtccttgtctttaccaaaccaccaacaaaaagcaataagaagaaacacatttcactcgggctacaagcaagcaaacaaaccagcaacacacaaaaagcaaacagcttcgagaagtgcctttgtatgtggtgatccagtaagcctgttagttgacacagactgtattttgcttccttggccgcagcaagtattttgtcacagttgtttagacacaataatgaagtcagcacaacacagcagttctcactgaggcctacaaaaatctatctttgtaaccaaagtagtatttttgatcaatatagcatgcacttaccagaaaaactgtatgctaaagatgtcacaattgcctgtatgcagcaataaaccatgaagactgttactcgctactgtg

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