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2024-03-29 15:46:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_003438066            1916 bp    mRNA    linear   VRT 26-JUL-2018
DEFINITION  PREDICTED: Oreochromis niloticus vimentin (vim), mRNA.
ACCESSION   XM_003438066
VERSION     XM_003438066.5
DBLINK      BioProject: PRJNA354796
KEYWORDS    RefSeq.
SOURCE      Oreochromis niloticus (Nile tilapia)
  ORGANISM  Oreochromis niloticus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini;
            Oreochromis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_031982.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 26, 2018 this sequence version replaced XM_003438066.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oreochromis niloticus Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Oreochromis niloticus"
                     /mol_type="mRNA"
                     /isolate="F11D_XX"
                     /db_xref="taxon:8128"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /linkage_group="LG18"
     gene            1..1916
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 ESTs, 66 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 66 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100710451"
     CDS             161..1528
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_003438114.1"
                     /db_xref="GeneID:100710451"
                     /translation="
MAYRSGPHSSYRKMFGGEKTAVRSNYSSRQFSIPVRSSRVSFGLSSTPTIYASKTQRLRSSAAMPRLASENLDFSLSDAINSEFITNRTNEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLGDDIDRLREKLQDEISQREESEANMQSFRQDVDNAALARLDLERKVESLQEEINFLKKLHDEEMLELQNQIHQQQHVQVDMDIAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAARNNEALRVAKQESNDYRRQVQALTCEVDALKGTNESLERQMREMEENFSLETSGYQDTISRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMVDSKPLIETTTTKKVLIKTIETRDGQVINESTQNHDDMD"
     misc_feature    182..427
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    428..1357
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
tgtgccactcaagtcactgttacgtatttgcataaggaggagactataaatgagtaacggtttaggaaacgccttcccaggcgcactccgcggatgctgatagaaacaagatatattccagatcggcgacagtgctctggtacttaaagacacaaacaagatggcctatagatcaggtccacattcctcttaccgaaagatgttcggcggggagaaaaccgccgtaaggtccaactactcgagccgccagttttcgatcccggtgcgctcctcccgggtttccttcgggctctcctccaccccgaccatatacgcgtcgaagacccagaggctccggagcagtgcagccatgccccggctggcatccgagaacttggacttctccttgtctgacgccataaactccgaattcatcacgaaccgcaccaacgagaaggcgcagatgcagtccctcaatgaccgcttcgccaactacatcgagaaggttcgcttcttggagcagcaaaataagatcctactggcggagctggagcagctgcggggcaaagggacgtcccgggtcggagatctttacgaggacgagatgagggagctgagacgccaggtggaccagctcaccaacgaaaaggcccgcgtggaagttcaccgggataacctgggggacgacatcgacaggctgagagagaagttgcaggatgaaatttcccagcgggaggagtctgaggcaaacatgcagagctttagacaggatgtggacaacgctgccctcgccagactggacctggagcggaaagtggagtcactccaagaggaaatcaacttcctcaagaagctgcatgatgaggaaatgttggagctgcaaaatcagatccatcagcagcagcatgtgcaggtggacatggatatagctaagcctgacctgacagcggctctgagggacgtccgtctgcagtatgagaacctggcctccaaaaacatccaggaatcagaggaatggtacaaatccaagtttgctgacctcactgaagctgcagctaggaataatgaagctctgagagtggccaaacaggagtccaatgattacagacgccaagttcaggcacttacttgtgaagtggatgccctgaaaggaactaatgagtccttggagcgccagatgagggagatggaggagaacttctccttggagacgagcgggtaccaggacaccatcagccgtctggaggaggacattcacaacatgaaggatgagatggcccgtcacctccgcgagtaccaggacctgctaaatgtcaagatggctctggacattgagattgccacctatagaaagctgctggaaggagaggagagcagaatctccacccccttgccaaacttctcatctcttaacctgagagaaacaatggttgactccaaaccacttatcgaaaccacaacaaccaagaaagtcctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcgacccagaaccacgatgacatggactaataatgtccttgtctttaccaaaccaccaacaaaaagcaataagaagaaacacatttcactcgggctacaagcaagcaaacaagccaacaacacacaaaaagcaaacagcttcgagaagtgcctttgtatgtggtgatccagtaagcctgttagttgacacagactgtattttgcttccttggccgcagcaagtattttgtcacagttgtttagacacaataatgaagtcagcacaacacagcagttctcactgaggcctacaaaaatctatctttgtaaccaaagtagtatttttgatcaatatagcatgcacttaccagaaaaactgtatgctaaagatgtcacaattgcctgtatgcagcaataaaccatgaagactgttactcgc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]