2024-03-29 15:46:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003438066 1916 bp mRNA linear VRT 26-JUL-2018 DEFINITION PREDICTED: Oreochromis niloticus vimentin (vim), mRNA. ACCESSION XM_003438066 VERSION XM_003438066.5 DBLINK BioProject: PRJNA354796 KEYWORDS RefSeq. SOURCE Oreochromis niloticus (Nile tilapia) ORGANISM Oreochromis niloticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_031982.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2018 this sequence version replaced XM_003438066.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oreochromis niloticus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1916 /organism="Oreochromis niloticus" /mol_type="mRNA" /isolate="F11D_XX" /db_xref="taxon:8128" /sex="female" /tissue_type="blood" /dev_stage="adult" /linkage_group="LG18" gene 1..1916 /gene="vim" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 66 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns" /db_xref="GeneID:100710451" CDS 161..1528 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_003438114.1" /db_xref="GeneID:100710451" /translation="
MAYRSGPHSSYRKMFGGEKTAVRSNYSSRQFSIPVRSSRVSFGLSSTPTIYASKTQRLRSSAAMPRLASENLDFSLSDAINSEFITNRTNEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLGDDIDRLREKLQDEISQREESEANMQSFRQDVDNAALARLDLERKVESLQEEINFLKKLHDEEMLELQNQIHQQQHVQVDMDIAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAARNNEALRVAKQESNDYRRQVQALTCEVDALKGTNESLERQMREMEENFSLETSGYQDTISRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMVDSKPLIETTTTKKVLIKTIETRDGQVINESTQNHDDMD"
misc_feature 182..427 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 428..1357 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
tgtgccactcaagtcactgttacgtatttgcataaggaggagactataaatgagtaacggtttaggaaacgccttcccaggcgcactccgcggatgctgatagaaacaagatatattccagatcggcgacagtgctctggtacttaaagacacaaacaagatggcctatagatcaggtccacattcctcttaccgaaagatgttcggcggggagaaaaccgccgtaaggtccaactactcgagccgccagttttcgatcccggtgcgctcctcccgggtttccttcgggctctcctccaccccgaccatatacgcgtcgaagacccagaggctccggagcagtgcagccatgccccggctggcatccgagaacttggacttctccttgtctgacgccataaactccgaattcatcacgaaccgcaccaacgagaaggcgcagatgcagtccctcaatgaccgcttcgccaactacatcgagaaggttcgcttcttggagcagcaaaataagatcctactggcggagctggagcagctgcggggcaaagggacgtcccgggtcggagatctttacgaggacgagatgagggagctgagacgccaggtggaccagctcaccaacgaaaaggcccgcgtggaagttcaccgggataacctgggggacgacatcgacaggctgagagagaagttgcaggatgaaatttcccagcgggaggagtctgaggcaaacatgcagagctttagacaggatgtggacaacgctgccctcgccagactggacctggagcggaaagtggagtcactccaagaggaaatcaacttcctcaagaagctgcatgatgaggaaatgttggagctgcaaaatcagatccatcagcagcagcatgtgcaggtggacatggatatagctaagcctgacctgacagcggctctgagggacgtccgtctgcagtatgagaacctggcctccaaaaacatccaggaatcagaggaatggtacaaatccaagtttgctgacctcactgaagctgcagctaggaataatgaagctctgagagtggccaaacaggagtccaatgattacagacgccaagttcaggcacttacttgtgaagtggatgccctgaaaggaactaatgagtccttggagcgccagatgagggagatggaggagaacttctccttggagacgagcgggtaccaggacaccatcagccgtctggaggaggacattcacaacatgaaggatgagatggcccgtcacctccgcgagtaccaggacctgctaaatgtcaagatggctctggacattgagattgccacctatagaaagctgctggaaggagaggagagcagaatctccacccccttgccaaacttctcatctcttaacctgagagaaacaatggttgactccaaaccacttatcgaaaccacaacaaccaagaaagtcctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcgacccagaaccacgatgacatggactaataatgtccttgtctttaccaaaccaccaacaaaaagcaataagaagaaacacatttcactcgggctacaagcaagcaaacaagccaacaacacacaaaaagcaaacagcttcgagaagtgcctttgtatgtggtgatccagtaagcctgttagttgacacagactgtattttgcttccttggccgcagcaagtattttgtcacagttgtttagacacaataatgaagtcagcacaacacagcagttctcactgaggcctacaaaaatctatctttgtaaccaaagtagtatttttgatcaatatagcatgcacttaccagaaaaactgtatgctaaagatgtcacaattgcctgtatgcagcaataaaccatgaagactgttactcgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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