2024-04-26 22:56:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002917127 7455 bp mRNA linear MAM 26-MAY-2020 DEFINITION PREDICTED: Ailuropoda melanoleuca argonaute RISC component 1 (AGO1), transcript variant X2, mRNA. ACCESSION XM_002917127 VERSION XM_002917127.4 DBLINK BioProject: PRJNA633539 KEYWORDS RefSeq. SOURCE Ailuropoda melanoleuca (giant panda) ORGANISM Ailuropoda melanoleuca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048219.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 26, 2020 this sequence version replaced XM_002917127.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ailuropoda melanoleuca Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7455 /organism="Ailuropoda melanoleuca" /mol_type="mRNA" /isolate="Jingjing" /db_xref="taxon:9646" /chromosome="2" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..7455 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns" /db_xref="GeneID:100482671" CDS 193..2766 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_002917173.1" /db_xref="GeneID:100482671" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 292..684 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 712..864 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 865..1227 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1021..1023,1066..1068,1108..1110,1120..1122, 1174..1176,1195..1197,1201..1203) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1360..2637 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1771..1773,1783..1785,1819..1830,1837..1839, 1861..1863,1870..1872,1882..1884,1894..1896) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1975..1977,1981..1983,2191..2193,2605..2607) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
gggggagctgctgcaggctccgcggtggcggcggcaacggaggctgcgggggcagcggcgcgagcggccgggcttgggggggggtgccgagcccggcccggaagcccgagcagctagagtgcggggtacctaggcccctcactctggactccacagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcctacctgccccccctgcagcaggtgttccaggcacctcgtcggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgatgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatttttggtgatcgcaagcctgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagctattgttagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacagactctcagcgtgtgcgtttcaccaaggagatcaaaggcctaaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcctttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacctaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccaactgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctgtccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccccggcaggagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtctacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttacattgtggtgcagaaacgccatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggacaactgtggacacaaacatcacccacccatttgagtttgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacataccagctgtgccacacttatgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggaggagggagggtagggaggagttcagaaggccttgtttccttctacaaagggggcaaaagggtggggaacggggccagtaagccagaccaccagccagaaatctctgatgtccacctcatgacccccactcctcaccccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatactcacaggtgtctcatgtgactcgcagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccccgtggacaaaagctggtaggtttgggtttgctactttagatgggagagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacgaaaccagacccagatcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatgattttggttgctcctcccccagctgccacccccccccctttcccttattcctttctctccaccttttctaccccacctcacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggttaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatactcctaacccaacaagcctccagccagagcgccagctattttgcattcagaggaattgacttccctattcattgagcttttaagaagatcacaacctcaagatggttaaagtccattgacatttgcactttcagacatgacaagtcttggagctgctgagatgactggcccctggcctttccatttaacacctccttttctcgctgtccccccagcctcctcatctgcctgggtctggagttaactttcatagcatttctcattcttggcttcttttttcccctgatggtcaagtcgcttatgtttcaatatttcttaactggggtgtcttataacaagaggtctaaacaaaggtctaaaataagaaaaaagagcaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaaatccctcccatgcccaataagtttacatcccagaaacattgagccatcagaagggactatgtacctgacttgttctttggcctggctaggtagagggtggttatctccccatggcggagctcaggctccatccttcccctgtgcagataatatctttttcttactataggctccctcctctgcactgccctgcactctttcctgcaagtgcatcttccctttctctggactgtcctctgacactttggctcatccctggttccagtgtgtcctctggacaggctgaagaattttgctgctccctattgcttctgtttacacaaatgaatttttcccagtttcccactagggcatgcgagtgggtggcatgggcctttgttttgttttgttttttttgtctccctggataaagatggggtttggttgtcttgcagaactggaaaagtagggggtttctagcttggtgcctgctggccttgaggcaaggccccctctttccttaactgttcatttttttcccatcccactgcttgggatgaggagttgcaacttcagtgtggaaggtcctctttttgaggagcttgggcttgggtttgccccaatctggtgatgaagccatgacactttagacctagctcaggctgggaggccggtctgaatcctggcctgtgtgcttagagctaccatttcccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtctatcccaggttctgttctggttggctactttgttcagcgacttcacaaaacgtagcacaaacgttgattatggagaaggcatcaggactgttgagtaactcctcctctatttctttcctcctggctacagcatgggttgccccatgggcacagcccagctgaagaatggaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatactgtctacttcgtgttccgtcaccctttggggaggggagctctcttgggacaatgggctctgcatgttctcttcttgggtgcatttaggggctgggatcagggcactgttcctggagggtccagtcattcaccagcatttgcaaatatacatagggagctggtggtagccacctactctcagcaacaagtttatgttctctcctttttctctctttgcctcactctctccatttaggttttgagctggggcctgaaatgcatttattagccctttggcattgcacatgccattcaagaaataaaaagcaagagaagcggtttgggcaatggcaagaaaatgacttcttgctctgattttttttttttttatctttgagacttgaaaaatacccttgaccttgaggattattcttgtttgaaagatggtgcatgcagattgagaagtggttttagcagcaagctttggctttcttggatttggtttaagtggtgcttcttacttgtgttctgaggaagtgttggggggaccccagcctcatcctcttggacaggtctcttgctccctttgttctactctcttacctctcttttctacttctctctttccctggcgtccttttccttttttcaattcactaagcttgtttgctggcctgcctgcctatgtgatgatgaattctctgcatggctatgataatcccactgttagctagcaaggtcaggcttagctccttggctgcagaagaccaaaaatctgttccccaagcctggtaatgttctctctgggctggactgccatcgacgttacacaagggcagagcagcaggcctgcctacctggcgtgaaatcaggagggcttctgacaacttccatacctgtccactccttggagttggtttttctcattgcttttttctagatctggttccatttctctacctggggcctcccttttatgaggctgtcctagggttaagctacttggtttccagggttggagggttcggggttggacatgggggaagaagagagtgatgggaagagaatggagagaatttggataaaagatgggaaagagcactgttcattgatcatttttccagtccagtctgacccactgggggttgaggtgctactgttgaactcgggataagcctggggctattgttgatgggaatctaggtttagaataatgttgacaaggaaaatacctaaaagcatgaaacctccctaaaaagctcctggttcccacctactagataactccactgtggcctcctctttggctaagcaacaatgttcttggatggttgtttttttgttttgttttgttttgttttgttttggggggggggtccagaattcagtaaatgaggctagcactcaggatgggcagccaaggggacattttgaattcttagctggcccatggtgtatctctctgcaaggctggtggggcagtgttttagacctggcatcatgtgtaacaaagaagaatggaagttccttccccttcagggtggaaagtcatctcaaactagccaaaatgcagttttggaaactacattgggggaagttattttatatatttactgggcctaggccaatccaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggatatgcagggcactctttcctatttagccttctaagcagactggggagaagggattctctggttttctctttccccccttttattaggacttgccttctccctaggcagggagagaggctaggttggtgctctccccttactctattcctactgacttagaacctctggctgctgttttggagcctaagaatgggagtggagggaatgggctcaaaacaaaacagaataaggtggggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcaaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccaacctgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccgttgtaaaattatcccagcagctgtaatgtacagttccttctaaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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