2024-04-19 20:53:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001372049 1490 bp mRNA linear PLN 30-APR-2021 DEFINITION Zea mays knotted related homeobox 8 (LOC606458), transcript variant 3, mRNA. ACCESSION NM_001372049 VERSION NM_001372049.1 KEYWORDS RefSeq. SOURCE Zea mays ORGANISM Zea mays Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. REFERENCE 1 (bases 1 to 1490) AUTHORS Yilmaz A, Nishiyama MY Jr, Fuentes BG, Souza GM, Janies D, Gray J and Grotewold E. TITLE GRASSIUS: a platform for comparative regulatory genomics across the grasses JOURNAL Plant Physiol 149 (1), 171-180 (2009) PUBMED 18987217 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CABHLF010000012.1. ##Evidence-Data-START## Transcript exon combination :: SRR3147022.15258.1, SRR12162136.5341270.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780152, SAMN01096141 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-609 CABHLF010000012.1 19877136-19877744 c 610-721 CABHLF010000012.1 19874367-19874478 c 722-963 CABHLF010000012.1 19869082-19869323 c 964-1490 CABHLF010000012.1 19868427-19868953 c FEATURES Location/Qualifiers source 1..1490 /organism="Zea mays" /mol_type="mRNA" /cultivar="B73" /db_xref="taxon:4577" /chromosome="1" /map="1" gene 1..1490 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="knotted related homeobox 8" /db_xref="GeneID:606458" exon 1..609 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" misc_feature 202..204 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="upstream in-frame stop codon" CDS 241..1194 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="isoform 3 is encoded by transcript variant 3; knotted 1-type homeobox protein 8; cR18; pge(F8); pge16c(knox8); putative knotted-like transcription factor family protein; HB-type transcription factor; homeobox protein rough sheath 1; homeobox protein knotted-1-like 12" /codon_start=1 /product="knotted related homeobox 8 isoform 3" /protein_id="NP_001358978.1" /db_xref="GeneID:606458" /translation="
MDSFGDLGGGGSSSSRAASAPFLQLPLPASTSSSAQQQQVFPPPDGPQQQHYHHSSRIPLRQLLLLADPSSAAQHSHRKADMATVQGEMSSPAADGDADAIKARIMSHPQYSALLAAYLDCQKEAYCNMLVKFHEEMARPIQEATEFFNSMERQLGSTISDSNCEVAGSSEDEQDASWPEEIDPCAEDKELKHQLLRKYGGYLGGLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHWKPASEDMPFAVMEGGFHVAQGTAALYMDRPAVPPFMADGGMYRLGS"
misc_feature 538..>615 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:427505" misc_feature <610..711 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 808..873 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature 931..1047 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 610..721 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" exon 722..963 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" exon 964..1490 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" ORIGIN
attcactcatgtacacctttcttcctcctctcttcatctcctatcccaaatatctatctcaaccatctacatggcttcatctcctcctttgttcccgtcgtccgatccatttgctatcttagccttagctagctagctagggtttcttgagtcgccttggcctcagcagcttccttcttcgtctgtcttctgattatatattaacacagtagaaataaagaagctagctatagccacgccatggatagcttcggggatcttggcggaggtgggagcagttcctccagagctgcttctgctcccttcttgcagctcccgctgccggcatcaacgtcgtcatcagcacaacaacaacaggtgtttccgccgccggacgggccgcagcagcagcactatcaccacagctcgcgcatcccgttgcgacagttactgttactggccgacccgtcgtcggcagcgcagcatagccatcggaaggcggacatggcaacagtgcagggagagatgtcgtcgccggcggcggatggggatgccgacgccatcaaggccaggatcatgtcgcacccccagtactcggccctcctcgccgcctacttggactgccaaaaggaggcttactgcaacatgctggtgaagttccacgaggagatggcgcggccgatccaggaggcaacggagttcttcaacagcatggagaggcagctcggctcgacgatctccgacagtaactgtgaggtcgccgggtcgtccgaggatgagcaggacgcgagctggcctgaggagatcgatccctgcgccgaggacaaggagctcaagcaccagcttctgaggaagtacggcggctacctgggcggccttcgccaggagttctccaagaggaagaagaaagggaagctccccaaggaggcgaggcagaagttgctgcactggtgggagctgcactacaagtggccctacccttctgagacggagaagatggcgctcgcagagacgaccgggctggacccgaagcagatcaacaactggttcatcaaccagcggaagcggcactggaagccggcgtcggaggacatgccgttcgcggtgatggagggcgggttccacgtcgcgcagggcaccgcagcgctgtatatggacaggccggcggtgccgccgttcatggcggacggcgggatgtaccggctggggtcgtgagggccggcatgcacggtaaaagctaagcacgtgtgccagcacgacggtgattgttgaggtgtagtagtgattgaactgattgctccttctcatccgtaaatatacagtttcgggttgacacgtttttctcgatctgcaaggtaggcatcatgttgttctccttattttctttttttctccctgaagacgaccggtaataaaatatattagcactatgatgtactgtatatagggaaaatttagggagaactgtcaaaggagataagatttaggggataaaatcttttaaagggtgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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