2024-04-20 13:20:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001372048 1619 bp mRNA linear PLN 30-APR-2021 DEFINITION Zea mays knotted related homeobox 8 (LOC606458), transcript variant 1, mRNA. ACCESSION NM_001372048 VERSION NM_001372048.1 KEYWORDS RefSeq. SOURCE Zea mays ORGANISM Zea mays Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. REFERENCE 1 (bases 1 to 1619) AUTHORS Yilmaz A, Nishiyama MY Jr, Fuentes BG, Souza GM, Janies D, Gray J and Grotewold E. TITLE GRASSIUS: a platform for comparative regulatory genomics across the grasses JOURNAL Plant Physiol 149 (1), 171-180 (2009) PUBMED 18987217 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CABHLF010000012.1. ##Evidence-Data-START## Transcript exon combination :: SRR3147046.16156.1, SRR12162140.2501618.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096175, SAMN01096176 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-380 CABHLF010000012.1 19877136-19877515 c 381-783 CABHLF010000012.1 19874916-19875318 c 784-921 CABHLF010000012.1 19874645-19874782 c 922-1033 CABHLF010000012.1 19874367-19874478 c 1034-1275 CABHLF010000012.1 19869082-19869323 c 1276-1619 CABHLF010000012.1 19868610-19868953 c FEATURES Location/Qualifiers source 1..1619 /organism="Zea mays" /mol_type="mRNA" /cultivar="B73" /db_xref="taxon:4577" /chromosome="1" /map="1" gene 1..1619 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="knotted related homeobox 8" /db_xref="GeneID:606458" exon 1..380 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" CDS 295..1506 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="isoform 1 is encoded by transcript variant 1; knotted 1-type homeobox protein 8; cR18; pge(F8); pge16c(knox8); putative knotted-like transcription factor family protein; HB-type transcription factor; homeobox protein rough sheath 1; homeobox protein knotted-1-like 12" /codon_start=1 /product="knotted related homeobox 8 isoform 1" /protein_id="NP_001358977.1" /db_xref="GeneID:606458" /translation="
MGMPTPSRPGSCRTPSTRPSSPPTWTAKSRNKEASYSDAMDSFGDLGGGGSSSSRAASAPFLQLPLPASTSSAQQQVLFPLPDGPQQQHHHHSSRIPLRQLLLLADPSSAAQHSASHRTKDMATVQGEMSSPAVDGDADAIKARIMSHPQYSALLAAYLDCQKVGAPPDVSDRLSAMAAANLDAQPGPISRRRGPTTTRADDPELDQFMEAYCNMLVKFHEEMARPIQEATEFFNSMERQLGSTISDSNCEVAGSSEDEQDASWPEEIDPCAEDKELKHQLLRKYGGYLGGLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHWKPASEDMPFAVMEGGFHVAQGTAALYMDRPAVPPFMADGGMYRLGS"
misc_feature 712..831 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:427505" misc_feature 895..1023 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 1120..1185 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature 1243..1359 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 381..783 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" exon 784..921 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" exon 922..1033 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" exon 1034..1275 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" exon 1276..1619 /gene="LOC606458" /gene_synonym="GRMZM2G135447; knox8; knox8a" /inference="alignment:Splign:2.1.0" ORIGIN
atagccacgccatggatagcttcggggatcttggcggaggtgggagcagttcctccagagctgcttctgctcccttcttgcagctcccgctgccggcatcaacgtcgtcatcagcacaacaacaacaggtgtttccgccgccggacgggccgcagcagcagcactatcaccacagctcgcgcatcccgttgcgacagttactgttactggccgacccgtcgtcggcagcgcagcatagccatcggaaggcggacatggcaacagtgcagggagagatgtcgtcgccggcggcggatggggatgccgacgccatcaaggccaggatcatgtcgcacccccagtactcggccctcctcgccgcctacttggactgccaaaagtagaaataaagaagctagctatagcgacgccatggatagcttcggggatcttggcggaggtgggagcagttcctccagagctgcttctgctcccttcttgcagctcccgctgccggcatcaacgtcatcagcacaacaacaggtgttatttccgctgccggacgggccgcagcagcagcaccatcaccacagctcgcgcatcccgttgcgacagttactgttactggccgacccgtcgtcggcagcgcagcatagcgctagccatcggacgaaggacatggcaacagtgcagggagagatgtcgtcgccggcggtggatggggatgccgacgccatcaaggccaggatcatgtcgcacccccagtactcggccctcctcgccgcctacttagactgccaaaaggtcggcgcgccgccggatgtgtcggataggctctcggccatggcggcggcgaatctggacgcgcagccggggccaataagccggcggcgcggcccgacgacgacgcgagctgatgacccggagctcgaccagttcatggaggcttactgcaacatgctggtgaagttccacgaggagatggcgcggccgatccaggaggcaacggagttcttcaacagcatggagaggcagctcggctcgacgatctccgacagtaactgtgaggtcgccgggtcgtccgaggatgagcaggacgcgagctggcctgaggagatcgatccctgcgccgaggacaaggagctcaagcaccagcttctgaggaagtacggcggctacctgggcggccttcgccaggagttctccaagaggaagaagaaagggaagctccccaaggaggcgaggcagaagttgctgcactggtgggagctgcactacaagtggccctacccttctgagacggagaagatggcgctcgcagagacgaccgggctggacccgaagcagatcaacaactggttcatcaaccagcggaagcggcactggaagccggcgtcggaggacatgccgttcgcggtgatggagggcgggttccacgtcgcgcagggcaccgcagcgctgtatatggacaggccggcggtgccgccgttcatggcggacggcgggatgtaccggctggggtcgtgagggccggcatgcacggtaaaagctaagcacgtgtgccagcacgacggtgattgttgaggtgtagtagtgattgaactgattgctccttctcatccgtaaatatacagtttcgg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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