2024-03-29 08:32:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001329250 1490 bp mRNA linear VRT 23-MAR-2023 DEFINITION Ictalurus punctatus claudin 31 (cldn31), mRNA. ACCESSION NM_001329250 XM_017457547 VERSION NM_001329250.1 KEYWORDS RefSeq. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 1490) AUTHORS Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z. TITLE Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets JOURNAL Comp Biochem Physiol Part D Genomics Proteomics 13, 60-69 (2015) PUBMED 25681604 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from KM870799.1. On Jul 8, 2016 this sequence version replaced XM_017457547.1. ##Evidence-Data-START## Transcript exon combination :: KM870799.1, JT408525.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04372580 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1490 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /chromosome="26" /map="26" gene 1..1490 /gene="cldn31" /gene_synonym="CLDN31a" /note="claudin 31" /db_xref="GeneID:108258715" exon 1..70 /gene="cldn31" /gene_synonym="CLDN31a" /inference="alignment:Splign:2.1.0" exon 71..1490 /gene="cldn31" /gene_synonym="CLDN31a" /inference="alignment:Splign:2.1.0" misc_feature 221..223 /gene="cldn31" /gene_synonym="CLDN31a" /note="upstream in-frame stop codon" CDS 269..925 /gene="cldn31" /gene_synonym="CLDN31a" /note="claudin 31a" /codon_start=1 /product="claudin 31" /protein_id="NP_001316179.1" /db_xref="GeneID:108258715" /translation="
MATTGLQVLGLLVSIAGWVGGILVCAAPFWRVSAFVADELVVSQVLWEGLWMTCLSQLGRIQCKVYDSALALSGSTQFCRVMVILSILFGLLAVPLGVIGMKCTHCIEGARDVKTRLVRTAGGIFMAAGVAFFLPIFWTTFSVIRDFYDPNVAPPLKRELGPALYLGGGVAFMMLVGGVMLYQGGSAPSGVPTKPTFGKGAGPAKDNPTEGKQDKAYV"
misc_feature 278..811 /gene="cldn31" /gene_synonym="CLDN31a" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
cacacacacacacttcagacccacagagccatatcttcaaacaccacgaacagcttcacgcactggtttgtgttgttgctgctccttctttcctgtccatttgtccagaatctttgagctctaaagaaattcgtacaacagaaaatgaacttacagacaaactaaactgacttacagagggaacgttaaaggctaattagaaaaaaaaaaaacaatttaataaccttcatcacaatctcagccaaatagttattgtttatatcggacaatggcgactacaggtctccaggtccttggcctgttggtttcgatagcaggatgggtgggtgggattttggtttgcgccgccccattttggcgcgtatcagctttcgtcgcagatgagctcgtggtatctcaggtgctgtgggaggggctgtggatgacctgcctatcacagttggggaggatccagtgtaaagtatacgactccgcactcgctctctcaggctccacccagttttgccgtgtgatggttattttatctatcctcttcggattattggctgtaccattgggtgtgattgggatgaagtgcacacactgcatcgagggtgcgcgcgacgttaagactcgcctggtgcgtacggcaggtggcatcttcatggcggccggtgtggctttctttttgccaattttctggaccactttctctgtgattcgggacttttacgacccgaacgtggcaccaccactcaagcgtgaactaggccctgccctgtatctcggaggaggcgtggcctttatgatgttggttggaggggtcatgctgtaccaaggaggctctgcccctagtggagttccaaccaagcctacttttggcaaaggggcggggccagccaaggacaatccgacggaggggaaacaggacaaggcttatgtgtgaacaaggaatcaggattgtcaggtcatcgaaatgaattcagaaatttccagacaagttaaaacaagcaagaggaaatatctgtacttcagacatgtttaattaaaatcaacaatacatttaaaaaaaagtaaaaagtgacaaaaatcatctgatttcctgtagcactgaatacaacctgtttaagatctgattttatgttgattataatagttataattgattctaataatctaattagtttgtttttcctaactagtgttaaattttgaaaaaaaatagaaagtgtgtttttgctgcatatagtcattttaaaatgaatgattatatataaataatacaacgcaaataaatatcaatgacatttttattattttttatcacattttacactctatagctgaatttttcattaatgttatttattaatgtcattaaaataacttactatgcttgctttatacaagctgattatttctttatggtgtggttttatttctgattattccttctgtgtaaaaaataaaaataaaactagtccttaacaataaaacgaagtcaccgccaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]