LOCUS       NM_001326850             765 bp    mRNA    linear   PLN 03-MAY-2021
DEFINITION  Gossypium hirsutum homeobox-leucine zipper protein HAT5-like
            (LOC107897578), mRNA.
ACCESSION   NM_001326850 XM_016823070
VERSION     NM_001326850.1
KEYWORDS    RefSeq.
SOURCE      Gossypium hirsutum (cotton)
  ORGANISM  Gossypium hirsutum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae;
            Gossypium.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Qin YF, Li DD, Wu YJ, Liu ZH, Zhang J, Zheng Y and Li XB.
  TITLE     Three cotton homeobox genes are preferentially expressed during
            early seedling development and in response to phytohormone
            signaling
  JOURNAL   Plant Cell Rep 29 (10), 1147-1156 (2010)
   PUBMED   20676891
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from HM134792.1.
            
            On May 24, 2016 this sequence version replaced XM_016823070.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: HM134792.1, DV848829.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02338737, SAMN02338738
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Gossypium hirsutum"
                     /mol_type="mRNA"
                     /db_xref="taxon:3635"
                     /chromosome="A10"
                     /map="A10"
     gene            1..765
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /note="homeobox-leucine zipper protein HAT5-like"
                     /db_xref="GeneID:107897578"
     CDS             1..765
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /note="homeodomain-leucine zipper protein HD3"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HAT5-like"
                     /protein_id="NP_001313779.1"
                     /db_xref="GeneID:107897578"
                     /translation="

MLLLGNTEPIFRGARTMVSMEENPKKRLFFSSPEDLYDEEYYDEQLPEKKRRLTSEQVYLLEKSFEAENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSFDSLQSNYDTILKENEKLKSEVASLTEKLQAKDVATEAIAGEKDEGLAAEMASALQFSMKVEDRLSSGSVGSAVVDEDAPQLVDSGNSYFPSDEYSRGIGPFDGVQSEDEDGSDNCGSYFSDVFATTEQEALGLWAWS"

     misc_feature    order(145..153,157..159,208..210,226..228,265..267,
                     271..276,283..288,292..300,304..309)
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    145..306
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(145..147,154..156,274..276,283..288,295..297)
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    310..435
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     exon            1..37
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /inference="alignment:Splign:2.1.0"
     exon            38..171
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /inference="alignment:Splign:2.1.0"
     exon            172..411
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /inference="alignment:Splign:2.1.0"
     exon            412..765
                     /gene="LOC107897578"
                     /gene_synonym="HB3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atgttgcttctcgggaacactgaacccatctttcgaggggcaagaacaatggttagcatggaggaaaacccaaagaagcgactgttcttcagctcgccggaggatttgtacgacgaagagtactacgacgagcagttgcccgagaaaaagcgtcgccttacgtcggagcaggtgtatctgctagagaagagctttgaggcagagaacaagctggagccggagaggaagagccagttggccaaaaagttaggactgcaaccaaggcaggtggcggtatggttccagaaccgccgtgcaaggtggaagacaaagcagcttgaaagggactatgacctcctcaaatcttcctttgattcccttcagtccaattatgacactattctcaaagaaaatgagaagctcaaatctgaggtagcttccttgactgaaaaactacaagccaaagatgtggcaacagaagcaatagcaggtgaaaaggatgaagggttagcagctgagatggcctccgccctccaattcagtatgaaggtggaggaccgtcttagtagcggcagtgtcggaagcgcggtggtggatgaggatgccccacagctggtggacagcggcaattcctactttccaagcgatgaatactccagaggcattggccctttcgatggggttcagtcggaagatgaggatggcagtgataattgcgggagttacttctccgatgtgttcgcaaccacagagcaggaggcattaggattgtgggcctggtcttaa

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