2024-04-25 13:30:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001325780 2366 bp mRNA linear PLN 13-MAY-2016 DEFINITION Nicotiana tabacum L-type lectin-domain containing receptor kinase VII.1-like (LOC107806042), mRNA. ACCESSION NM_001325780 VERSION NM_001325780.1 KEYWORDS RefSeq. SOURCE Nicotiana tabacum (common tobacco) ORGANISM Nicotiana tabacum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana. REFERENCE 1 (bases 1 to 2366) AUTHORS Sasabe M, Naito K, Suenaga H, Ikeda T, Toyoda K, Inagaki Y, Shiraishi T and Ichinose Y. TITLE Elicitin-responsive lectin-like receptor kinase genes in BY-2 cells JOURNAL DNA Seq. 18 (2), 152-159 (2007) PUBMED 17364827 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB265223.1. ##Evidence-Data-START## Transcript is intronless :: AB265223.1 [ECO:0000345] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2366 /organism="Nicotiana tabacum" /mol_type="mRNA" /db_xref="taxon:4097" gene 1..2366 /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="L-type lectin-domain containing receptor kinase VII.1-like" /db_xref="GeneID:107806042" CDS 16..2109 /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="lectin-receptor like protein kinase 3" /codon_start=1 /product="L-type lectin-domain containing receptor kinase VII.1-like precursor" /protein_id="NP_001312709.1" /db_xref="GeneID:107806042" /translation="
MNQHLKTLLLYLLITIFSCIQSVSAIDFVFNGFKPSDISLFGIATIESGILTLTNDSTFSIGRALHPSKIVTKAPNSSQVLPFSASFIFAMAPFKDRLPGHGIVFLFVPQTGIDGTTSSQNLGFLNFTNNGNPDNHVFGVEFDVFKNQEFNDINDNHVGIDVNSLASVFAHEAGYWPDKYNKFSDDGSLNEESFETLKLNNGRNYQVWIDYADFQINVTMAPIGMKRPKQPLLDFPLNLSQVFEEEMYVGFTASTGDLAQGHKILAWSFSNSNFSISDALITQGLPSFELPKDPVHRSKGFIAGMTVSLLFLVVVTAVVSLFLIKRNRRMKREREEMEDWELEYWPHRISYQEIDAATKGFADENVIGIGGNGKVYKGVLAGSSEVAVKRISHESSEGARQFLAEISSLGRLKHRNLVSLRGWCKKDRRSLILVYDYMENGSLDKTLFECDETNMLSFEDRIRILKDVASGVLYLHEGWEAKVLHRDIKASNVLLDKDMNARLGDFGLARMHDHGQVANTTRVVGTVGYLAPEFVKTGRASTQTDVFGYGVLVLEVMCGRRPIEEEGKPPLLDWLWELMRRGELINAFDRRLRTSQDFNEEEALRVLQLGMICASLDPKGRPTMRQVVKFFERNSEADESEAEDMDVYLLETLRSNTMLSNFSLSLSHGSHPTFEEIREGLSSSMSISWTNSLVDGR"
sig_peptide 16..90 /gene="LOC107806042" /gene_synonym="NtlecRK3" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 91..816 /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor; Region: lectin_legume_LecRK_Arcelin_ConA; cd06899" /db_xref="CDD:173887" misc_feature order(91..96,100..102,124..126,211..213,220..222,520..522, 637..639,664..666,670..678,703..711,715..717,751..753) /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="homotetramer interaction site [polypeptide binding]; other site" /db_xref="CDD:173887" misc_feature order(91..96,100..102,124..126,211..213,220..222,751..753) /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="homodimer interaction site [polypeptide binding]; other site" /db_xref="CDD:173887" misc_feature 391..393 /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="N-linked glycosylation site; other site" /db_xref="CDD:173887" misc_feature order(436..438,442..444,484..486) /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173887" misc_feature 1114..1914 /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs; Region: STKc_IRAK; cd14066" /db_xref="CDD:270968" misc_feature order(1114..1128,1138..1140,1174..1176,1180..1182, 1267..1269,1318..1329,1339..1341,1345..1347,1474..1476, 1480..1482,1486..1491,1495..1497,1528..1530,1537..1539, 1588..1599) /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="active site" /db_xref="CDD:270968" misc_feature order(1114..1128,1138..1140,1174..1176,1180..1182, 1267..1269,1318..1329,1339..1341,1474..1476,1480..1482, 1486..1491,1495..1497,1528..1530) /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270968" misc_feature order(1126..1128,1339..1341,1345..1347,1474..1476, 1480..1482,1486..1488,1537..1539,1588..1599) /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270968" misc_feature order(1525..1545,1576..1599) /gene="LOC107806042" /gene_synonym="NtlecRK3" /note="activation loop (A-loop); other site" /db_xref="CDD:270968" ORIGIN
ggcacgagggttacaatgaaccaacacctaaaaactcttcttctctacctgctgataaccatatttagctgtattcaatcagtttcagctattgattttgtgtttaatggctttaaaccatcagatatatcactgtttgggattgctacaattgaatctggaatacttactcttacaaatgactcaactttctcaattggcagagctctacacccttcaaagattgtcacaaaagcacccaattcatcccaagttcttcccttttcagcatctttcatttttgcgatggctccttttaaggacaggctaccaggacatggcatagttttcttgtttgttccacaaacaggtattgatggtactacttcttcgcagaatttaggttttttgaacttcacaaataatgggaatcctgataatcatgtttttggggttgagtttgatgttttcaagaatcaagaattcaatgacataaatgacaaccatgttggaattgatgttaattctcttgcatcagtctttgctcatgaagctggctattggcctgataagtacaacaagtttagtgatgacggtagcttaaatgaagagtctttcgagactttaaagttgaataatggaagaaattaccaagtttggattgactatgcagattttcagattaatgtgactatggcaccaattggtatgaaaaggcctaagcaacctttgttggattttcccctcaatctttctcaggtttttgaggaagagatgtatgtggggttcactgcctccactggtgatcttgctcaaggtcacaagattttagcttggagttttagtaactcgaatttttcgataagtgatgctttgatcacacaggggttgccttcatttgagctgcctaaagatccagttcatcgatcgaagggattcattgcaggtatgacagtgtcactcttgtttcttgttgtggtcactgctgtagtttcattgtttctgattaagagaaataggagaatgaaaagggaaagagaggaaatggaagattgggaattggaatattggccacataggattagttatcaagaaattgatgctgcaacaaagggttttgctgatgaaaatgtgattggaattggaggtaatgggaaggtatataaaggggttttggctgggagttcagaggttgcagtaaagcgcatttctcatgaaagcagtgaaggggcaagacaattcttggctgagatttcaagtcttggtaggctaaagcacagaaatttggtgtcactaagaggctggtgcaagaaagaccgacgcagcttgattttggtttatgattatatggaaaatgggagcttggataaaacgctgtttgaatgtgatgagacaaacatgttgagttttgaagatagaattaggattttgaaagatgtggcatcaggagttctatacttgcatgagggatgggaggcaaaagtgttacatagggacattaaggctagcaatgttttacttgacaaggacatgaatgcaagactaggtgattttggtctagccagaatgcatgatcatggtcaagtggctaacacgactcgagttgttggcacagttggttacttggcaccagagtttgtcaagactggtcgtgcctctacacaaactgatgtgtttggatatggagttttagttttggaggtgatgtgtggaaggaggcctatagaggaggaaggcaagccccctttattggattggctgtgggaactaatgagacgaggcgagttgattaatgcctttgatcgtcgattaaggacaagtcaagatttcaatgaagaggaagcattaagagtattgcaattaggcatgatatgcgcgagcctagaccccaaaggtaggccaaccatgagacaagtagtgaaattctttgaaaggaacagtgaggctgatgaatctgaagctgaggatatggatgtttaccttctggagactttgagatctaataccatgttgtccaatttttccttgagtttgagccatggttcacacccaacatttgaagaaattagagaaggtttgtcttcttccatgtccatttcttggacaaattctttggtggatggtaggtgacttttacatctctgcaggctgctaagaggaatggttcgtttttgttcatcactctgctttaaatcttggtacctgcatttccagtacttccagggcctagcattagtggaaatggtagtgctgcttcatgtacaaatttgtaggttggctaaggtaaaagggttggttttgagatatacatgtattcatttttttataccttgatagtagttgagtggtagaatttgttctctttgtaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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