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2024-04-25 13:30:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001325780            2366 bp    mRNA    linear   PLN 13-MAY-2016
DEFINITION  Nicotiana tabacum L-type lectin-domain containing receptor kinase
            VII.1-like (LOC107806042), mRNA.
ACCESSION   NM_001325780
VERSION     NM_001325780.1
KEYWORDS    RefSeq.
SOURCE      Nicotiana tabacum (common tobacco)
  ORGANISM  Nicotiana tabacum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Nicotianoideae; Nicotianeae; Nicotiana.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Sasabe M, Naito K, Suenaga H, Ikeda T, Toyoda K, Inagaki Y,
            Shiraishi T and Ichinose Y.
  TITLE     Elicitin-responsive lectin-like receptor kinase genes in BY-2 cells
  JOURNAL   DNA Seq. 18 (2), 152-159 (2007)
   PUBMED   17364827
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB265223.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AB265223.1 [ECO:0000345]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Nicotiana tabacum"
                     /mol_type="mRNA"
                     /db_xref="taxon:4097"
     gene            1..2366
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="L-type lectin-domain containing receptor kinase
                     VII.1-like"
                     /db_xref="GeneID:107806042"
     CDS             16..2109
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="lectin-receptor like protein kinase 3"
                     /codon_start=1
                     /product="L-type lectin-domain containing receptor kinase
                     VII.1-like precursor"
                     /protein_id="NP_001312709.1"
                     /db_xref="GeneID:107806042"
                     /translation="
MNQHLKTLLLYLLITIFSCIQSVSAIDFVFNGFKPSDISLFGIATIESGILTLTNDSTFSIGRALHPSKIVTKAPNSSQVLPFSASFIFAMAPFKDRLPGHGIVFLFVPQTGIDGTTSSQNLGFLNFTNNGNPDNHVFGVEFDVFKNQEFNDINDNHVGIDVNSLASVFAHEAGYWPDKYNKFSDDGSLNEESFETLKLNNGRNYQVWIDYADFQINVTMAPIGMKRPKQPLLDFPLNLSQVFEEEMYVGFTASTGDLAQGHKILAWSFSNSNFSISDALITQGLPSFELPKDPVHRSKGFIAGMTVSLLFLVVVTAVVSLFLIKRNRRMKREREEMEDWELEYWPHRISYQEIDAATKGFADENVIGIGGNGKVYKGVLAGSSEVAVKRISHESSEGARQFLAEISSLGRLKHRNLVSLRGWCKKDRRSLILVYDYMENGSLDKTLFECDETNMLSFEDRIRILKDVASGVLYLHEGWEAKVLHRDIKASNVLLDKDMNARLGDFGLARMHDHGQVANTTRVVGTVGYLAPEFVKTGRASTQTDVFGYGVLVLEVMCGRRPIEEEGKPPLLDWLWELMRRGELINAFDRRLRTSQDFNEEEALRVLQLGMICASLDPKGRPTMRQVVKFFERNSEADESEAEDMDVYLLETLRSNTMLSNFSLSLSHGSHPTFEEIREGLSSSMSISWTNSLVDGR"
     sig_peptide     16..90
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    91..816
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="legume lectins, lectin-like receptor kinases,
                     arcelin, concanavalinA, and alpha-amylase inhibitor;
                     Region: lectin_legume_LecRK_Arcelin_ConA; cd06899"
                     /db_xref="CDD:173887"
     misc_feature    order(91..96,100..102,124..126,211..213,220..222,520..522,
                     637..639,664..666,670..678,703..711,715..717,751..753)
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="homotetramer interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:173887"
     misc_feature    order(91..96,100..102,124..126,211..213,220..222,751..753)
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="homodimer interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:173887"
     misc_feature    391..393
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="N-linked glycosylation site; other site"
                     /db_xref="CDD:173887"
     misc_feature    order(436..438,442..444,484..486)
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:173887"
     misc_feature    1114..1914
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="Catalytic domain of the Serine/Threonine kinases,
                     Interleukin-1 Receptor Associated Kinases and related
                     STKs; Region: STKc_IRAK; cd14066"
                     /db_xref="CDD:270968"
     misc_feature    order(1114..1128,1138..1140,1174..1176,1180..1182,
                     1267..1269,1318..1329,1339..1341,1345..1347,1474..1476,
                     1480..1482,1486..1491,1495..1497,1528..1530,1537..1539,
                     1588..1599)
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="active site"
                     /db_xref="CDD:270968"
     misc_feature    order(1114..1128,1138..1140,1174..1176,1180..1182,
                     1267..1269,1318..1329,1339..1341,1474..1476,1480..1482,
                     1486..1491,1495..1497,1528..1530)
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270968"
     misc_feature    order(1126..1128,1339..1341,1345..1347,1474..1476,
                     1480..1482,1486..1488,1537..1539,1588..1599)
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270968"
     misc_feature    order(1525..1545,1576..1599)
                     /gene="LOC107806042"
                     /gene_synonym="NtlecRK3"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270968"
ORIGIN      
ggcacgagggttacaatgaaccaacacctaaaaactcttcttctctacctgctgataaccatatttagctgtattcaatcagtttcagctattgattttgtgtttaatggctttaaaccatcagatatatcactgtttgggattgctacaattgaatctggaatacttactcttacaaatgactcaactttctcaattggcagagctctacacccttcaaagattgtcacaaaagcacccaattcatcccaagttcttcccttttcagcatctttcatttttgcgatggctccttttaaggacaggctaccaggacatggcatagttttcttgtttgttccacaaacaggtattgatggtactacttcttcgcagaatttaggttttttgaacttcacaaataatgggaatcctgataatcatgtttttggggttgagtttgatgttttcaagaatcaagaattcaatgacataaatgacaaccatgttggaattgatgttaattctcttgcatcagtctttgctcatgaagctggctattggcctgataagtacaacaagtttagtgatgacggtagcttaaatgaagagtctttcgagactttaaagttgaataatggaagaaattaccaagtttggattgactatgcagattttcagattaatgtgactatggcaccaattggtatgaaaaggcctaagcaacctttgttggattttcccctcaatctttctcaggtttttgaggaagagatgtatgtggggttcactgcctccactggtgatcttgctcaaggtcacaagattttagcttggagttttagtaactcgaatttttcgataagtgatgctttgatcacacaggggttgccttcatttgagctgcctaaagatccagttcatcgatcgaagggattcattgcaggtatgacagtgtcactcttgtttcttgttgtggtcactgctgtagtttcattgtttctgattaagagaaataggagaatgaaaagggaaagagaggaaatggaagattgggaattggaatattggccacataggattagttatcaagaaattgatgctgcaacaaagggttttgctgatgaaaatgtgattggaattggaggtaatgggaaggtatataaaggggttttggctgggagttcagaggttgcagtaaagcgcatttctcatgaaagcagtgaaggggcaagacaattcttggctgagatttcaagtcttggtaggctaaagcacagaaatttggtgtcactaagaggctggtgcaagaaagaccgacgcagcttgattttggtttatgattatatggaaaatgggagcttggataaaacgctgtttgaatgtgatgagacaaacatgttgagttttgaagatagaattaggattttgaaagatgtggcatcaggagttctatacttgcatgagggatgggaggcaaaagtgttacatagggacattaaggctagcaatgttttacttgacaaggacatgaatgcaagactaggtgattttggtctagccagaatgcatgatcatggtcaagtggctaacacgactcgagttgttggcacagttggttacttggcaccagagtttgtcaagactggtcgtgcctctacacaaactgatgtgtttggatatggagttttagttttggaggtgatgtgtggaaggaggcctatagaggaggaaggcaagccccctttattggattggctgtgggaactaatgagacgaggcgagttgattaatgcctttgatcgtcgattaaggacaagtcaagatttcaatgaagaggaagcattaagagtattgcaattaggcatgatatgcgcgagcctagaccccaaaggtaggccaaccatgagacaagtagtgaaattctttgaaaggaacagtgaggctgatgaatctgaagctgaggatatggatgtttaccttctggagactttgagatctaataccatgttgtccaatttttccttgagtttgagccatggttcacacccaacatttgaagaaattagagaaggtttgtcttcttccatgtccatttcttggacaaattctttggtggatggtaggtgacttttacatctctgcaggctgctaagaggaatggttcgtttttgttcatcactctgctttaaatcttggtacctgcatttccagtacttccagggcctagcattagtggaaatggtagtgctgcttcatgtacaaatttgtaggttggctaaggtaaaagggttggttttgagatatacatgtattcatttttttataccttgatagtagttgagtggtagaatttgttctctttgtaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]