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2024-03-29 00:27:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001315814            1572 bp    mRNA    linear   PLN 04-JUL-2022
DEFINITION  Brassica napus homeobox-leucine zipper protein ATHB-6-like
            (LOC106363703), mRNA.
ACCESSION   NM_001315814
VERSION     NM_001315814.1
KEYWORDS    RefSeq.
SOURCE      Brassica napus (rape)
  ORGANISM  Brassica napus
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Brassiceae; Brassica.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY336103.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY336103.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Brassica napus"
                     /mol_type="mRNA"
                     /db_xref="taxon:3708"
                     /chromosome="A9"
                     /map="A9"
     gene            1..1572
                     /gene="LOC106363703"
                     /note="homeobox-leucine zipper protein ATHB-6-like"
                     /db_xref="GeneID:106363703"
     misc_feature    195..197
                     /gene="LOC106363703"
                     /note="upstream in-frame stop codon"
     CDS             207..1142
                     /gene="LOC106363703"
                     /note="homeodomain-leucine zipper protein"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ATHB-6-like"
                     /protein_id="NP_001302743.1"
                     /db_xref="GeneID:106363703"
                     /translation="
MMKRLSSSDSVGGLISLCPTTSTDQPSPRRYGREFQSMLEGYEEEEEEAITEERGQTGLAEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEIGKLKAKLNGEEEVEEDDEDEENNAVTMESDVSVKEEEVSLPEELTDPPSSPPQLLEHSDSFNYRSFTDLRDLLPLKAAASSVAAAGSSDSSDSSAVLNEESSSNVTAAPATVPRGSFLQFVKMEQTEDHDDFLSGEEACGFFSDEQPPSLHWYSTVDQWN"
     misc_feature    order(390..398,402..404,453..455,471..473,510..512,
                     516..521,528..533,537..545,549..554)
                     /gene="LOC106363703"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    390..551
                     /gene="LOC106363703"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(390..392,399..401,519..521,528..533,540..542)
                     /gene="LOC106363703"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    555..680
                     /gene="LOC106363703"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
ORIGIN      
ttcatatggaaaacaaagaactctgtctctctctctcctctcttactgaatagaatctccccattgttctaatttatctcttccttcaaagtattgatcatcaagtactagatgcattttaaactgagagttaaaacaaacaaaaaaatcattattttgaagtaactaaaaggtttttgagaagaccctttttgtagtgctgtttgatgatgaagagattaagcagttcagattcagtgggtggtctcatctctttatgtcccactacttccacagatcagccgagtccaagaagatacgggagagaatttcagtcgatgcttgaaggttacgaggaggaagaagaagaagccataaccgaggaaagaggacaaaccggtttagccgagaagaagagacggttaagcattaaccaagttaaagccttggagaaaaatttcgagttagagaacaagcttgagcccgagaggaaagtgaagctagctcaagaacttggtctccaacctcgtcaagtagctgtttggtttcagaaccgccgtgcgcggtggaagacaaaacagctcgagaaagattacggtgttctcaaaacgcagtacgattctctccgccataacttcgattccctccgccgtgacaatgaatctcttcttcaagagatcggtaaactaaaagctaagctaaacggagaagaagaagttgaagaagatgatgaagatgaagagaacaacgcggtcacgatggagagtgatgtttccgtcaaggaagaagaagtttcgttgccggaggagcttacagatccgccgtcttctcctccgcagcttctagagcattccgacagtttcaattaccggagtttcaccgacctccgcgaccttcttccgttaaaggccgcggcttcctccgtcgccgccgctggatcgtcggacagtagcgattcgagcgccgtgttgaacgaggaaagtagctctaacgttacggcggctccggcgacggttccccggggcagtttcttgcagtttgtgaaaatggagcagacggaggatcacgacgactttctgagtggagaagaagcgtgcgggtttttctccgatgaacagccaccgtctctgcactggtattccaccgttgatcagtggaactgaggcttttgatcaccgggagagggtttttgaattggattaaaatgttctgttatgattcgccggagaagattgaaaaagcggagggcggaatgggaataatggtgaaattgcaagggttcattctgggcgggaatataattaattagggtgatttttgtaattatgcgctctcttgcgtttcgttcagttcttgtaattaaggatcatgcgaatttgagaaaggggtggaaaattctaaagggcgaaaactagaaatggaatctttgcgggattgaattcaagaatttgaaagaattcacgtgtaataaattttgcagtattttaaatgattttataagattttaatgcaattgtataatttttatgtttatcttttgccatagaatttaagtgaatgtaaattaatttgatggaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]