2024-03-29 00:27:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001315814 1572 bp mRNA linear PLN 04-JUL-2022 DEFINITION Brassica napus homeobox-leucine zipper protein ATHB-6-like (LOC106363703), mRNA. ACCESSION NM_001315814 VERSION NM_001315814.1 KEYWORDS RefSeq. SOURCE Brassica napus (rape) ORGANISM Brassica napus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY336103.1. ##Evidence-Data-START## Transcript exon combination :: AY336103.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1572 /organism="Brassica napus" /mol_type="mRNA" /db_xref="taxon:3708" /chromosome="A9" /map="A9" gene 1..1572 /gene="LOC106363703" /note="homeobox-leucine zipper protein ATHB-6-like" /db_xref="GeneID:106363703" misc_feature 195..197 /gene="LOC106363703" /note="upstream in-frame stop codon" CDS 207..1142 /gene="LOC106363703" /note="homeodomain-leucine zipper protein" /codon_start=1 /product="homeobox-leucine zipper protein ATHB-6-like" /protein_id="NP_001302743.1" /db_xref="GeneID:106363703" /translation="
MMKRLSSSDSVGGLISLCPTTSTDQPSPRRYGREFQSMLEGYEEEEEEAITEERGQTGLAEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEIGKLKAKLNGEEEVEEDDEDEENNAVTMESDVSVKEEEVSLPEELTDPPSSPPQLLEHSDSFNYRSFTDLRDLLPLKAAASSVAAAGSSDSSDSSAVLNEESSSNVTAAPATVPRGSFLQFVKMEQTEDHDDFLSGEEACGFFSDEQPPSLHWYSTVDQWN"
misc_feature order(390..398,402..404,453..455,471..473,510..512, 516..521,528..533,537..545,549..554) /gene="LOC106363703" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 390..551 /gene="LOC106363703" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(390..392,399..401,519..521,528..533,540..542) /gene="LOC106363703" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 555..680 /gene="LOC106363703" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:426641" ORIGIN
ttcatatggaaaacaaagaactctgtctctctctctcctctcttactgaatagaatctccccattgttctaatttatctcttccttcaaagtattgatcatcaagtactagatgcattttaaactgagagttaaaacaaacaaaaaaatcattattttgaagtaactaaaaggtttttgagaagaccctttttgtagtgctgtttgatgatgaagagattaagcagttcagattcagtgggtggtctcatctctttatgtcccactacttccacagatcagccgagtccaagaagatacgggagagaatttcagtcgatgcttgaaggttacgaggaggaagaagaagaagccataaccgaggaaagaggacaaaccggtttagccgagaagaagagacggttaagcattaaccaagttaaagccttggagaaaaatttcgagttagagaacaagcttgagcccgagaggaaagtgaagctagctcaagaacttggtctccaacctcgtcaagtagctgtttggtttcagaaccgccgtgcgcggtggaagacaaaacagctcgagaaagattacggtgttctcaaaacgcagtacgattctctccgccataacttcgattccctccgccgtgacaatgaatctcttcttcaagagatcggtaaactaaaagctaagctaaacggagaagaagaagttgaagaagatgatgaagatgaagagaacaacgcggtcacgatggagagtgatgtttccgtcaaggaagaagaagtttcgttgccggaggagcttacagatccgccgtcttctcctccgcagcttctagagcattccgacagtttcaattaccggagtttcaccgacctccgcgaccttcttccgttaaaggccgcggcttcctccgtcgccgccgctggatcgtcggacagtagcgattcgagcgccgtgttgaacgaggaaagtagctctaacgttacggcggctccggcgacggttccccggggcagtttcttgcagtttgtgaaaatggagcagacggaggatcacgacgactttctgagtggagaagaagcgtgcgggtttttctccgatgaacagccaccgtctctgcactggtattccaccgttgatcagtggaactgaggcttttgatcaccgggagagggtttttgaattggattaaaatgttctgttatgattcgccggagaagattgaaaaagcggagggcggaatgggaataatggtgaaattgcaagggttcattctgggcgggaatataattaattagggtgatttttgtaattatgcgctctcttgcgtttcgttcagttcttgtaattaaggatcatgcgaatttgagaaaggggtggaaaattctaaagggcgaaaactagaaatggaatctttgcgggattgaattcaagaatttgaaagaattcacgtgtaataaattttgcagtattttaaatgattttataagattttaatgcaattgtataatttttatgtttatcttttgccatagaatttaagtgaatgtaaattaatttgatggaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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