2024-04-27 12:41:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001267070 1722 bp mRNA linear PLN 21-FEB-2022 DEFINITION Glycine max homeobox protein knotted-1-like 2-like (LOC100807602), mRNA. ACCESSION NM_001267070 XM_003544461 XM_003544462 XM_003544463 XM_003544464 VERSION NM_001267070.1 KEYWORDS RefSeq. SOURCE Glycine max (soybean) ORGANISM Glycine max Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from HM107002.1. On or before May 27, 2012 this sequence version replaced XM_003544461.1, XM_003544462.1, XM_003544463.1, XM_003544464.1. ##Evidence-Data-START## Transcript exon combination :: HM107002.1, SRR12327364.1321081.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN16295013, SAMN16295014 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1722 /organism="Glycine max" /mol_type="mRNA" /cultivar="Dongnong 44" /db_xref="taxon:3847" /chromosome="14" /map="14" gene 1..1722 /gene="LOC100807602" /note="homeobox protein knotted-1-like 2-like" /db_xref="GeneID:100807602" misc_feature 209..211 /gene="LOC100807602" /note="upstream in-frame stop codon" CDS 245..1402 /gene="LOC100807602" /note="KNOX-like DNA-binding protein" /codon_start=1 /product="homeobox protein knotted-1-like 2-like" /protein_id="NP_001253999.1" /db_xref="GeneID:100807602" /translation="
MEEYTSNNHLSENTGPSPSTPRPNFLYSSASGGNHNHQHQHHSHHHHHHHQFPINTFHLQSGGSDHCFQSDQVSPHPSVKSEASTSQLHAPIFHYPLMRGNLHNTMHHPQQQGGSPTSSTGEVEAIKAKIIAHPQYSNVLEAYMDCQKIGAPPEVVARMAAAKQEFEARQRSSVGSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGAGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP"
misc_feature 617..736 /gene="LOC100807602" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:427505" misc_feature 776..919 /gene="LOC100807602" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 1043..1108 /gene="LOC100807602" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature 1166..1282 /gene="LOC100807602" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN
ttggaccccaacacaaaacatcacacaagtgctgatggtggtgtggcccttcttattatttcatcttacaacaaccactcattaccaatccctcaactattttagggttcagaaacccttagggttttcttgttcctcatagtggattgagtagtacctcttggtttgtttgttggagcctcttgttcagctgggttaattagctgagtgagagagttttttgcttcccaatttcaaaaaattaatggaggaatacactagtaataatcacttgagtgaaaacacaggtccaagtccaagtactccaaggccaaatttcttgtactcttcagctagtggtggaaaccataatcatcagcatcagcatcatagccatcaccaccaccaccaccaccagtttccaatcaacacctttcatcttcaatcgggtggatcagatcattgctttcagtctgatcaagtttcaccacacccttctgtcaaatccgaagccagcacttctcagctccacgctccgattttccactaccctttaatgagaggaaaccttcacaacactatgcatcatcctcagcaacaaggagggagcccaactagctccactggtgaagttgaagccataaaagctaaaatcattgctcaccctcagtactccaatgttttagaagcctacatggattgtcaaaagataggagctccacccgaagtggtggcgcgtatggctgcggctaagcaagagtttgaggcacggcaaagatcttcagttggttcaagggaaacttcaaaagaccctgaacttgaccaattcatggaagcatactatgacatgcttgtgaagtatagagaggaattaacaaggcctattcaagaggctatggatttcatgcgaaggatagaaactcagctaaatatgctttgcaatggacccgtgcggatcttctctgatgataaatgtgaaggtgccggttcatcagaagaggatcaagacaacagtggaggagaaacagaacttcccgagattgatccccgagcagaagaccgtgaactcaaaaaccacttgctgaagaagtacagtggttacttaagtagccttaagcaagaactctccaagaagaaaaagaaagggaaacttcccaaagatgctaggcaaaagctacttaactggtgggaattacattacaaatggccatatccttcggaatcagagaaggtggcattggctgaatcaactggtttggaccaaaagcaaataaataactggttcataaaccagaggaagaggcattggaaaccatctgaagacatgcaatttatggtgatggatggcctgcatccgcagagtgcaactctctatatggatggtcactacatggcagatggtcactaccgtctaggaccatgacaaaagacaaggccaccttataaattattattatatatatttttaattgtaatttaaatgcaaggtatgtgtttcttattaacaaagagattgtgcccaaactggataacagtcaacgctctagctactagtttcaatattatcaagcatataccgtgaacattaattggttgtgcttgtgcagtgtgagtacttgagtagtttgccacagtgatgttgtacgttttattaaacaatgacggttgcttattatattttcataattagtagtattggtagagataatatatattcataagatgtgtcacatttggatttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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