2024-03-29 16:32:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001253281 1668 bp mRNA linear PLN 30-APR-2021 DEFINITION Glycine max homeobox-leucine zipper protein HAT5-like (LOC100813420), mRNA. ACCESSION NM_001253281 XM_003553841 VERSION NM_001253281.2 KEYWORDS RefSeq. SOURCE Glycine max (soybean) ORGANISM Glycine max Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK285378.1 and ACUP04006597.1. On Nov 29, 2018 this sequence version replaced NM_001253281.1. ##Evidence-Data-START## Transcript exon combination :: AK285378.1, BT093728.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN09064557, SAMN09064558 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1556 AK285378.1 2-1557 1557-1668 ACUP04006597.1 163387-163498 FEATURES Location/Qualifiers source 1..1668 /organism="Glycine max" /mol_type="mRNA" /cultivar="Nourin No.2" /db_xref="taxon:3847" /chromosome="19" /map="19" gene 1..1668 /gene="LOC100813420" /note="homeobox-leucine zipper protein HAT5-like" /db_xref="GeneID:100813420" exon 1..605 /gene="LOC100813420" /inference="alignment:Splign:2.1.0" misc_feature 455..457 /gene="LOC100813420" /note="upstream in-frame stop codon" CDS 518..1372 /gene="LOC100813420" /codon_start=1 /product="homeobox-leucine zipper protein HAT5-like" /protein_id="NP_001240210.1" /db_xref="GeneID:100813420" /translation="
MESGRIFFGASASSGNNMLFLGNTELAFRGRSIMSMEEASKRRPFFTSPDELYDEEYYEKQSPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVQAKEVPEEPLCDKKVDPIPVDEDMAPIFGTRVEDHLSSGSVGSAVVDEGSPQVVVDSVDSYILADNYGGCVGPVERVQSEEEDGSDDGRSYLDVFVVSETEHQNHEEGETLGWWTNMYYVG"
misc_feature order(710..718,722..724,773..775,791..793,830..832, 836..841,848..853,857..865,869..874) /gene="LOC100813420" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 710..871 /gene="LOC100813420" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(710..712,719..721,839..841,848..853,860..862) /gene="LOC100813420" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 875..1000 /gene="LOC100813420" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:426641" exon 606..736 /gene="LOC100813420" /inference="alignment:Splign:2.1.0" exon 737..976 /gene="LOC100813420" /inference="alignment:Splign:2.1.0" exon 977..1668 /gene="LOC100813420" /inference="alignment:Splign:2.1.0" ORIGIN
agtcgcagaaaacactcacaaagacacagagtgcgttcgttgacgacaaacacacacaaacacacaacaaaagctcgccggaaaatctttctccggcgacctggaattccgacgaaggtagttgcggctccttcgtcccgaaactgaggccctcaaagtataaactttggtggtggtgggtaggatctggcggtgtatgatgggatcttgcatatgcccgttggagactccggcgaggttgctttggaccacaagcttcttccgtcataagcttatgatcttctaataattaataattcacgcacacaaacaaacaaacaaacaaacaaaaaacacttcataacaacaacaacaacccttctgaaattctcaacacaagtttcaaaaaacagagtaaaagaaacagagcaaaaacacacacacaaaaacacaaacacagacaccttttaagtattaaggtgtctctttctctccccggaaagtttctccgtcggcggtggtgattgaccggagtgccatggagtctggacggattttctttggtgcctctgcttcaagcggcaacaacatgctctttctcggcaacactgaacttgcttttcgagggagatcgattatgagcatggaggaagcctcgaagaggcgacctttcttcacctcaccggatgaactgtatgatgaagagtattatgagaagcagtcgccggagaagaagcaccgcctcagttccgaacaggtccatctgttggagaagagctttgaggaagagaacaaattggagcctgagaggaagacccagttggctaagaagctgggattgcagcccaggcaggtggctgtgtggtttcagaaccgcagggctcgatggaagaccaagcaacttgaaagggattatgatgttctcaagtcttcatacgataccctactttcatcctatgattcaattatgaaggagaatgagaaactcaaatctgaggtggtatccttaaatgaaaagcttcaagttcaagctaaagaggtgcctgaggaaccattatgtgacaagaaagttgatccaattccagtagatgaagatatggctccgattttcggcacaagggtggaggaccacctgagtagtgggagtgttggaagtgcggtggtggatgagggtagtccacaggtggttgttgacagtgttgattcatacattctagctgacaactatggtggatgtgtgggcccggtcgagagggttcagtcggaggaggaggatgggagtgatgatgggaggagttacttggatgtgtttgtggtatctgaaactgagcaccaaaaccatgaggaaggagagacattgggttggtggactaatatgtattatgttggataaaatggtaatgcagcagtgctttcgaaattagatgcttaattaagaaaacgtaataatattgtataatgtatcatgtgggcgagggaggaaaaagtaaacgcctggattgggtggcttggacccctaggaggagttgaagtgtccttaacccgagtttaataaataaagtctagtagtaatttggtcaatggtgtcttgtgttggttaatggttgtactgccaaaattaaagtaagtatatttcttgttcaagtattaaaacatggttaattagtactatacaaaatttgagctgtc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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