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2024-03-29 16:32:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001253281            1668 bp    mRNA    linear   PLN 30-APR-2021
DEFINITION  Glycine max homeobox-leucine zipper protein HAT5-like
            (LOC100813420), mRNA.
ACCESSION   NM_001253281 XM_003553841
VERSION     NM_001253281.2
KEYWORDS    RefSeq.
SOURCE      Glycine max (soybean)
  ORGANISM  Glycine max
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
            kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
            Phaseoleae; Glycine; Glycine subgen. Soja.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK285378.1 and ACUP04006597.1.
            
            On Nov 29, 2018 this sequence version replaced NM_001253281.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK285378.1, BT093728.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN09064557, SAMN09064558
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1556              AK285378.1         2-1557
            1557-1668           ACUP04006597.1     163387-163498
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Glycine max"
                     /mol_type="mRNA"
                     /cultivar="Nourin No.2"
                     /db_xref="taxon:3847"
                     /chromosome="19"
                     /map="19"
     gene            1..1668
                     /gene="LOC100813420"
                     /note="homeobox-leucine zipper protein HAT5-like"
                     /db_xref="GeneID:100813420"
     exon            1..605
                     /gene="LOC100813420"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    455..457
                     /gene="LOC100813420"
                     /note="upstream in-frame stop codon"
     CDS             518..1372
                     /gene="LOC100813420"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HAT5-like"
                     /protein_id="NP_001240210.1"
                     /db_xref="GeneID:100813420"
                     /translation="
MESGRIFFGASASSGNNMLFLGNTELAFRGRSIMSMEEASKRRPFFTSPDELYDEEYYEKQSPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVQAKEVPEEPLCDKKVDPIPVDEDMAPIFGTRVEDHLSSGSVGSAVVDEGSPQVVVDSVDSYILADNYGGCVGPVERVQSEEEDGSDDGRSYLDVFVVSETEHQNHEEGETLGWWTNMYYVG"
     misc_feature    order(710..718,722..724,773..775,791..793,830..832,
                     836..841,848..853,857..865,869..874)
                     /gene="LOC100813420"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    710..871
                     /gene="LOC100813420"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(710..712,719..721,839..841,848..853,860..862)
                     /gene="LOC100813420"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    875..1000
                     /gene="LOC100813420"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     exon            606..736
                     /gene="LOC100813420"
                     /inference="alignment:Splign:2.1.0"
     exon            737..976
                     /gene="LOC100813420"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1668
                     /gene="LOC100813420"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
agtcgcagaaaacactcacaaagacacagagtgcgttcgttgacgacaaacacacacaaacacacaacaaaagctcgccggaaaatctttctccggcgacctggaattccgacgaaggtagttgcggctccttcgtcccgaaactgaggccctcaaagtataaactttggtggtggtgggtaggatctggcggtgtatgatgggatcttgcatatgcccgttggagactccggcgaggttgctttggaccacaagcttcttccgtcataagcttatgatcttctaataattaataattcacgcacacaaacaaacaaacaaacaaacaaaaaacacttcataacaacaacaacaacccttctgaaattctcaacacaagtttcaaaaaacagagtaaaagaaacagagcaaaaacacacacacaaaaacacaaacacagacaccttttaagtattaaggtgtctctttctctccccggaaagtttctccgtcggcggtggtgattgaccggagtgccatggagtctggacggattttctttggtgcctctgcttcaagcggcaacaacatgctctttctcggcaacactgaacttgcttttcgagggagatcgattatgagcatggaggaagcctcgaagaggcgacctttcttcacctcaccggatgaactgtatgatgaagagtattatgagaagcagtcgccggagaagaagcaccgcctcagttccgaacaggtccatctgttggagaagagctttgaggaagagaacaaattggagcctgagaggaagacccagttggctaagaagctgggattgcagcccaggcaggtggctgtgtggtttcagaaccgcagggctcgatggaagaccaagcaacttgaaagggattatgatgttctcaagtcttcatacgataccctactttcatcctatgattcaattatgaaggagaatgagaaactcaaatctgaggtggtatccttaaatgaaaagcttcaagttcaagctaaagaggtgcctgaggaaccattatgtgacaagaaagttgatccaattccagtagatgaagatatggctccgattttcggcacaagggtggaggaccacctgagtagtgggagtgttggaagtgcggtggtggatgagggtagtccacaggtggttgttgacagtgttgattcatacattctagctgacaactatggtggatgtgtgggcccggtcgagagggttcagtcggaggaggaggatgggagtgatgatgggaggagttacttggatgtgtttgtggtatctgaaactgagcaccaaaaccatgaggaaggagagacattgggttggtggactaatatgtattatgttggataaaatggtaatgcagcagtgctttcgaaattagatgcttaattaagaaaacgtaataatattgtataatgtatcatgtgggcgagggaggaaaaagtaaacgcctggattgggtggcttggacccctaggaggagttgaagtgtccttaacccgagtttaataaataaagtctagtagtaatttggtcaatggtgtcttgtgttggttaatggttgtactgccaaaattaaagtaagtatatttcttgttcaagtattaaaacatggttaattagtactatacaaaatttgagctgtc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]