2024-03-29 18:23:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001194111 2387 bp mRNA linear PRI 15-MAY-2021 DEFINITION Macaca mulatta NK3 homeobox 2 (NKX3-2), mRNA. ACCESSION NM_001194111 XM_001098720 VERSION NM_001194111.1 KEYWORDS RefSeq. SOURCE Macaca mulatta (Rhesus monkey) ORGANISM Macaca mulatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from QNVO02000366.1. On Aug 11, 2010 this sequence version replaced XM_001098720.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA4688442, SAMN03316965 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-687 QNVO02000366.1 37991650-37992336 688-2387 QNVO02000366.1 37993759-37995458 FEATURES Location/Qualifiers source 1..2387 /organism="Macaca mulatta" /mol_type="mRNA" /db_xref="taxon:9544" /chromosome="5" /map="5" gene 1..2387 /gene="NKX3-2" /note="NK3 homeobox 2" /db_xref="GeneID:713627" /db_xref="VGNC:VGNC:107186" exon 1..687 /gene="NKX3-2" /inference="alignment:Splign:2.1.0" misc_feature 39..41 /gene="NKX3-2" /note="upstream in-frame stop codon" CDS 222..1223 /gene="NKX3-2" /codon_start=1 /product="homeobox protein Nkx-3.2" /protein_id="NP_001181040.1" /db_xref="GeneID:713627" /db_xref="VGNC:VGNC:107186" /translation="
MAVRGANTLTPFSIQAILNKKEERGGLAAPEGRPASGGTTVSVAAAPAVCCWRLFGERDAGALGGAEDSLLASSAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADAPGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHMSALCSGAGGRGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ"
misc_feature order(840..854,858..860,909..911,927..929,966..968, 972..977,984..989,993..1001,1005..1010) /gene="NKX3-2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 846..1007 /gene="NKX3-2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(846..848,855..857,975..977,984..989,996..998) /gene="NKX3-2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 688..2387 /gene="NKX3-2" /inference="alignment:Splign:2.1.0" ORIGIN
agggggtctccgggcgggttgggcctctaaggtgggggtgagggtcggcgcagatcctgggacggagtggggcgggggctgctgggccgcgcaggagtgggcggcggcggcctcgtacacccggctcactcgcgctgcggccgccggctctctctgtcccgctcggagctgctcggcgccccagctgcccgccccggcggccgctccggcccgcggcgcagatggctgtgcgcggcgccaacaccttgacgcccttctccatccaggcgatcctcaacaaaaaagaggagcgcggcgggctggccgcgccagaggggcgcccggcatccgggggcacaacggtgtcggtggccgcggcgcccgctgtctgctgttggcggctctttggggagagggacgcgggcgcgctggggggcgccgaggactctctgctggcgtcttctgccggtaccagaacagctgcggggcggactgcggagagcccggaaggctgggactcggactccgcgctcagcgaggagaacgagagcaggcggcgctgcgctgacgcgccaggggccagcggggccggcctcgcggggggatccttgagcctcggccagccggtctgtgagctggccgcttccaaagacctagaggaggaagccgcgggccggagcgacagcgagatgtccgccagcgtctcaggcgaccgcagcccaaggaccgaggacgacggtgttggccccagaggtgcacacatgtccgcgctgtgcagcggggccggcggcaggggcggcagcgggccggcaggcgtcgcggaggaggaggaggagccggcggcgcccaagccacgcaagaagcggtcgcgggccgccttctcccacgcgcaggtcttcgagctggagcgccgctttaaccaccagcgctacctctccgggccggagcgcgccgacctggccgcgtcgctgaagctcaccgagacgcaggtgaaaatctggttccagaaccgtcgctacaagaccaagcgccggcagatggccgccgacctgctggcctcggcgcccgccgccaagaaggtggcggtaaaggtgctggtgcgcgacgaccagagacaatacctgcccggcgaagttctgcggccaccctcgcttctgccactgcagccctcctactattacccctactactgcctcccaggctgggcgctctccacctgcgcggccgccgcaggcacccagtgaaccggcctgggctgaggcagcgagtaattcccgcgccccggctccggaccgccgctgacagctgtaggctgtagcctgcacggggcgccccgccaaggaggcacctggaggtgaaactcagctccagctcccgttagccaggacttgtcccctggcagctgggctgagtctgccccgagggggcgccttttactaatttgaacagaggcaccctatggcctaggggccctgatagcccacctgcctggaagcccctgggctctatttattatcacgacaatgttggagttgaatttggattcgaattatgtctgcctgggggtggggttttccctaagcgggaactcctggagaccacatagcctgaatcctcagaatttccggcctgctgggagctttctgcactaggccacactagttcatggtatccatgctaccaatctatgtgtatctacatatcttttatttttggaaattgcatttgtaaccaaggggtgcgaaaccctggcagtcccaggcagcaccaggccaggggttgatttgaaaagtgaaggactgggttttcaggccctctactccacccctcccttgtgtcagagctagggtgggggcgcccgattggggtgctgaatgtaatgaagggggcctccgagtgtggtgcaagccgtgggtctccacatcttccctctctgaagtccaggtacctgcacaagcaggaaacgcctaggagccccggaaggaggagagggcacacccgggcagccctctgcggaaactttccttcatttctttttatttgtttaaaggaggttaagacgtgtagcacttttcagttgtttgtattcaaatgacgattatttttgtactcaatgtgaatatccctggccagcctttccagggcgcccaccgcagtgccgctgcctggccctcagtctctaccttccgccctctgcgactcctgcgctctggcccgggactcccctatccgcccctcacttacccttaaacaggagatcccacctgtcttgtcaacctcgccgcttttcgcctccttaatggcactgtgcactcaactagagtattaactgtaaaaagatttgtgaagtttggaagctctattcgctgtattttttctttaatttataaacttttagtttaacatgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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