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2024-03-29 18:23:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001194111            2387 bp    mRNA    linear   PRI 15-MAY-2021
DEFINITION  Macaca mulatta NK3 homeobox 2 (NKX3-2), mRNA.
ACCESSION   NM_001194111 XM_001098720
VERSION     NM_001194111.1
KEYWORDS    RefSeq.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from QNVO02000366.1.
            
            On Aug 11, 2010 this sequence version replaced XM_001098720.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA4688442,
                              SAMN03316965 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-687               QNVO02000366.1     37991650-37992336
            688-2387            QNVO02000366.1     37993759-37995458
FEATURES             Location/Qualifiers
     source          1..2387
                     /organism="Macaca mulatta"
                     /mol_type="mRNA"
                     /db_xref="taxon:9544"
                     /chromosome="5"
                     /map="5"
     gene            1..2387
                     /gene="NKX3-2"
                     /note="NK3 homeobox 2"
                     /db_xref="GeneID:713627"
                     /db_xref="VGNC:VGNC:107186"
     exon            1..687
                     /gene="NKX3-2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    39..41
                     /gene="NKX3-2"
                     /note="upstream in-frame stop codon"
     CDS             222..1223
                     /gene="NKX3-2"
                     /codon_start=1
                     /product="homeobox protein Nkx-3.2"
                     /protein_id="NP_001181040.1"
                     /db_xref="GeneID:713627"
                     /db_xref="VGNC:VGNC:107186"
                     /translation="
MAVRGANTLTPFSIQAILNKKEERGGLAAPEGRPASGGTTVSVAAAPAVCCWRLFGERDAGALGGAEDSLLASSAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADAPGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHMSALCSGAGGRGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ"
     misc_feature    order(840..854,858..860,909..911,927..929,966..968,
                     972..977,984..989,993..1001,1005..1010)
                     /gene="NKX3-2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    846..1007
                     /gene="NKX3-2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(846..848,855..857,975..977,984..989,996..998)
                     /gene="NKX3-2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            688..2387
                     /gene="NKX3-2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
agggggtctccgggcgggttgggcctctaaggtgggggtgagggtcggcgcagatcctgggacggagtggggcgggggctgctgggccgcgcaggagtgggcggcggcggcctcgtacacccggctcactcgcgctgcggccgccggctctctctgtcccgctcggagctgctcggcgccccagctgcccgccccggcggccgctccggcccgcggcgcagatggctgtgcgcggcgccaacaccttgacgcccttctccatccaggcgatcctcaacaaaaaagaggagcgcggcgggctggccgcgccagaggggcgcccggcatccgggggcacaacggtgtcggtggccgcggcgcccgctgtctgctgttggcggctctttggggagagggacgcgggcgcgctggggggcgccgaggactctctgctggcgtcttctgccggtaccagaacagctgcggggcggactgcggagagcccggaaggctgggactcggactccgcgctcagcgaggagaacgagagcaggcggcgctgcgctgacgcgccaggggccagcggggccggcctcgcggggggatccttgagcctcggccagccggtctgtgagctggccgcttccaaagacctagaggaggaagccgcgggccggagcgacagcgagatgtccgccagcgtctcaggcgaccgcagcccaaggaccgaggacgacggtgttggccccagaggtgcacacatgtccgcgctgtgcagcggggccggcggcaggggcggcagcgggccggcaggcgtcgcggaggaggaggaggagccggcggcgcccaagccacgcaagaagcggtcgcgggccgccttctcccacgcgcaggtcttcgagctggagcgccgctttaaccaccagcgctacctctccgggccggagcgcgccgacctggccgcgtcgctgaagctcaccgagacgcaggtgaaaatctggttccagaaccgtcgctacaagaccaagcgccggcagatggccgccgacctgctggcctcggcgcccgccgccaagaaggtggcggtaaaggtgctggtgcgcgacgaccagagacaatacctgcccggcgaagttctgcggccaccctcgcttctgccactgcagccctcctactattacccctactactgcctcccaggctgggcgctctccacctgcgcggccgccgcaggcacccagtgaaccggcctgggctgaggcagcgagtaattcccgcgccccggctccggaccgccgctgacagctgtaggctgtagcctgcacggggcgccccgccaaggaggcacctggaggtgaaactcagctccagctcccgttagccaggacttgtcccctggcagctgggctgagtctgccccgagggggcgccttttactaatttgaacagaggcaccctatggcctaggggccctgatagcccacctgcctggaagcccctgggctctatttattatcacgacaatgttggagttgaatttggattcgaattatgtctgcctgggggtggggttttccctaagcgggaactcctggagaccacatagcctgaatcctcagaatttccggcctgctgggagctttctgcactaggccacactagttcatggtatccatgctaccaatctatgtgtatctacatatcttttatttttggaaattgcatttgtaaccaaggggtgcgaaaccctggcagtcccaggcagcaccaggccaggggttgatttgaaaagtgaaggactgggttttcaggccctctactccacccctcccttgtgtcagagctagggtgggggcgcccgattggggtgctgaatgtaatgaagggggcctccgagtgtggtgcaagccgtgggtctccacatcttccctctctgaagtccaggtacctgcacaagcaggaaacgcctaggagccccggaaggaggagagggcacacccgggcagccctctgcggaaactttccttcatttctttttatttgtttaaaggaggttaagacgtgtagcacttttcagttgtttgtattcaaatgacgattatttttgtactcaatgtgaatatccctggccagcctttccagggcgcccaccgcagtgccgctgcctggccctcagtctctaccttccgccctctgcgactcctgcgctctggcccgggactcccctatccgcccctcacttacccttaaacaggagatcccacctgtcttgtcaacctcgccgcttttcgcctccttaatggcactgtgcactcaactagagtattaactgtaaaaagatttgtgaagtttggaagctctattcgctgtattttttctttaatttataaacttttagtttaacatgc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]