LOCUS       NM_001139567             879 bp    mRNA    linear   VRT 18-DEC-2022
DEFINITION  Salmo salar homeobox protein HoxA7ab (hoxa7ab), mRNA.
ACCESSION   NM_001139567
VERSION     NM_001139567.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D.
  TITLE     Differential evolution of the 13 Atlantic salmon Hox clusters
  JOURNAL   Mol Biol Evol 25 (7), 1333-1343 (2008)
   PUBMED   18424774
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF695314.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF695314.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02597924, SAMN02597925
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa14"
                     /map="ssa14"
     gene            1..879
                     /gene="hoxa7ab"
                     /gene_synonym="hoxa7"
                     /note="homeobox protein HoxA7ab"
                     /db_xref="GeneID:100194477"
     exon            1..412
                     /gene="hoxa7ab"
                     /gene_synonym="hoxa7"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..804
                     /gene="hoxa7ab"
                     /gene_synonym="hoxa7"
                     /note="Homeobox protein S12-A"
                     /codon_start=1
                     /product="homeobox protein Hox-A7"
                     /protein_id="NP_001133039.1"
                     /db_xref="GeneID:100194477"
                     /translation="

MSSYYVDGLFRKYTATGSFFPNTDRGSCALRPSGEGPASVHSAAASAFPTSLSGLYNVNNAIYQSPPMFTPAYDQGPDVHSLHCSSFDQSRLFGDSCIQPVPGPLTSPEDKHYRMYPWMRTSDPNRKRGRQTYSRYQTLELEKEFHFNRYLNRRRRVEIAHVLCLTERQIKIWFQNRRMKWKKDHKDESSSSNLSANSENVNKDGDGNPVTNGQSNAQEAEQGDSPSAGVASETPAREGDGDVEPINERNTP"

     misc_feature    order(424..438,442..444,493..495,511..513,550..552,
                     556..561,568..573,577..585,589..594)
                     /gene="hoxa7ab"
                     /gene_synonym="hoxa7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(430..432,439..441,559..561,568..573,580..582)
                     /gene="hoxa7ab"
                     /gene_synonym="hoxa7"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    433..591
                     /gene="hoxa7ab"
                     /gene_synonym="hoxa7"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            413..879
                     /gene="hoxa7ab"
                     /gene_synonym="hoxa7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aacgacactgaagattctggcccaacaaatcacaaggaaaaaaatatgagctcttattatgtggatggtctttttagaaaatatacggcgaccggttctttcttcccaaacaccgaccggggttcgtgcgctcttcgacccagtggagaaggacccgcatctgttcacagtgccgcagcctctgccttcccaacgtccttgtccggactttacaacgtcaacaatgctatttaccagagtcccccgatgtttactcctgcttatgaccaggggccggacgtgcacagtctgcactgcagctctttcgaccagagccgtctgttcggggacagctgcatccagccggtgccgggtccactcacctcgccagaggacaaacattaccggatgtacccctggatgagaacatcagatccaaacagaaagcgtggacgtcagacgtactcccggtaccagacactggagctggagaaagaattccactttaaccggtacctgaaccgccggaggcgcgtggagatagcgcacgtgctatgcctgaccgagcgccagatcaaaatctggttccagaaccggaggatgaagtggaagaaagatcacaaggacgagtcttcgagctcaaacctcagtgccaactcagagaacgtaaacaaggatggtgatggtaatccggtaaccaacggacagtccaatgcccaggaggcagagcaaggagattccccgtctgcgggtgtggcgtcagaaacccctgcaagagaaggagatggcgacgtagagcctattaatgaaagaaacactccataaatgtttgtatttgtcaaatgttaaagatgtatactctcatagaatcgacacactcttgttcatcgtggtttgttt

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