2024-03-29 13:58:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001112448 2974 bp mRNA linear PLN 30-APR-2021 DEFINITION Zea mays HOX1B protein (LOC732843), mRNA. ACCESSION NM_001112448 XM_020539216 VERSION NM_001112448.2 KEYWORDS RefSeq. SOURCE Zea mays ORGANISM Zea mays Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. REFERENCE 1 (bases 1 to 2974) AUTHORS Uberlacker B, Klinge B and Werr W. TITLE Ectopic expression of the maize homeobox genes ZmHox1a or ZmHox1b causes pleiotropic alterations in the vegetative and floral development of transgenic tobacco JOURNAL Plant Cell 8 (3), 349-362 (1996) PUBMED 8721746 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CABHLF010000009.1, FL194104.1 and EB403344.1. On or before Jun 14, 2017 this sequence version replaced XM_020539216.1, NM_001112448.1. ##Evidence-Data-START## Transcript exon combination :: GECS01009156.1, SRR3147053.9992.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-74 CABHLF010000009.1 113532709-113532782 c 75-214 FL194104.1 53-192 215-714 CABHLF010000009.1 113515114-113515613 c 715-880 CABHLF010000009.1 113514266-113514431 c 881-1004 CABHLF010000009.1 113514035-113514158 c 1005-1117 CABHLF010000009.1 113513845-113513957 c 1118-1345 CABHLF010000009.1 113513540-113513767 c 1346-2098 EB403344.1 1-753 2099-2974 CABHLF010000009.1 113510775-113511650 c FEATURES Location/Qualifiers source 1..2974 /organism="Zea mays" /mol_type="mRNA" /cultivar="B73" /db_xref="taxon:4577" /chromosome="6" /map="6" gene 1..2974 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /note="HOX1B protein" /db_xref="GeneID:732843" exon 1..127 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" exon 128..714 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" misc_feature 242..244 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /note="upstream in-frame stop codon" CDS 254..2332 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /note="putative homeodomain-like transcription factor superfamily protein" /codon_start=1 /product="HOX1B protein" /protein_id="NP_001105918.2" /db_xref="GeneID:732843" /translation="
MEKKTVHVPAEGNGEIENGTSSSQNPETLEHPVLLSASQTVPNNLGIRKNYKRAANRGKKGSQGLTGQAYTLRSSDIDVRVLRSTSGSKTTSTEHVQPPGQPAAKRRKRSRASNKNSTDEFSQIRKRVRYILNRMNYEQSLIEAYASEGWKNQSLDKIRPEKELERAKSEILRCKLRIREVFQNIDSLLSKGKIDESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKLDCIDLINELQGSDISIEDPWEKVFPEAAAMANSSKQDEAFDLPSDDSDDNDFDPNMPEEHVASKEEGSSEEEEDDDGGSDSDDSDFLTCSDDLEPLIDKKNVDDLGLPSEDSEDDDYDPAGPDSDKDVEKKSNSDESDFMSDSDDFCKEIKKSGGHDEVSSPPLPDVKVGDMEKNTAQSNTTSSADDPMETEIDQSVVLPVSRRRQAERLDYKRLYDEAYGEASSDSSDEEEWSGKNTPIKSNEEGEVGSPAGKGSRVAHHNELTTQNTKESLHSLHGSVDEKHGDLTSNGSNIKDRKGHFGPVISQKLHEHFKTQPYPSRSLKESLAEELGLTFHQVNRWFENRRHFARLASSRKGISPDKHSPQNTNSPVTPSMQPKEPEGTVMEESNVCINRDATISKKAVSSKVGSRKNLSKSSPKSRVRS"
misc_feature 884..1042 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /note="PHD finger found in Arabidopsis thaliana pathogenesis-related homeodomain protein (PRHA) and similar proteins; Region: PHD_PRHA_like; cd15504" /db_xref="CDD:276979" misc_feature order(884..886,926..940,953..955,1025..1027) /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:276979" misc_feature 1943..2092 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /note="Homeodomain; Region: HOX; smart00389" /db_xref="CDD:197696" misc_feature order(1943..1945,1952..1954,2072..2074,2081..2086) /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 715..880 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" exon 881..1004 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" exon 1005..1117 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" exon 1118..1705 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" exon 1706..1975 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" exon 1976..2065 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" exon 2066..2974 /gene="LOC732843" /gene_synonym="GRMZM2G094935; homeobox2; Hox1b" /inference="alignment:Splign:2.1.0" ORIGIN
ccgccgcttcgctcacgcggccacgcctcccgctcttcctccccgccacactcgccccacgcaggagaggaggagagccgccgggcctggaagcttctccgcggcgctgcgtcgccagctcgcagcgatttcaaggtgctggtgaatctggcttggccacatagatcttttttattgttgtcctcagaagacaggtttgctgagactgctttctgtctactgtaaattgatgaaattttggtgatcatatactatggaaaaaaagacagttcacgttccggctgagggtaatggtgagattgaaaatggtacgagctctagtcagaatcctgagacccttgagcatccagttttgctgtctgcatctcaaactgtgccaaataacttggggataaggaaaaactataaaagggcagcaaacagaggtaaaaagggttcccaaggactaacaggtcaggcatatactttgaggtcatctgatattgatgtcagggtgcttcgctctacatcaggttcaaagacaacatctactgagcatgtgcagcctccaggacaaccagctgccaagagaagaaaaaggagcagagcctcaaacaaaaattcgacagatgagttctcacaaattcgtaaacgggttagatacattttgaaccgaatgaattatgagcaaagcctaattgaagcttatgctagtgaaggctggaaaaatcaaagtttggataagataagacctgagaaggagcttgaacgagccaaatcagaaatcttacgatgcaaattgagaatacgggaagtcttccaaaatattgattctcttctatccaaggggaaaattgacgaatctttatttgattctgaaggagaaatatcttgtgaagatatcttttgtgctacttgtggttcgaaaaatgctacattgggtaatgatatcattctctgtgatggagcttgtgacagagggttccaccagaactgtctaaatcctcctctgcgtactgaagatattcccatgggagatgaaggatggctctgcccagcatgtgattgcaagttagactgtatagatctaataaatgaactccagggcagtgacatctccattgaggacccttgggagaaagtttttccagaggcagctgctatggccaatagctctaagcaagatgaagcatttgatcttccatctgatgattcggatgacaatgattttgaccccaatatgcctgaagagcatgtggctagtaaggaagaaggatcttctgaagaggaagaggatgatgacggaggatcagactctgacgactctgacttcttaacctgttctgatgatttggaacctttgatagataaaaagaatgttgatgacctgggattaccttctgaagattcagaggatgatgactatgatccagcaggtcctgattcggataaagatgtcgaaaagaagtcaaattctgatgagtctgatttcatgtctgactcggatgatttttgtaaggagattaaaaaatctggtggacatgatgaagtttcatcgcctccattacccgatgtcaaggtgggtgatatggaaaagaacactgctcagtctaacacaacaagttctgctgacgaccctatggagactgaaatagaccagagtgtggttttaccagtatcaaggaggcgtcaagctgaacggttggactacaaaaggctgtatgatgaggcatatggtgaagcatcatctgattctagtgatgaagaagaatggtctgggaagaacacaccaataaaaagcaatgaagagggtgaagttggttctcctgcaggaaaaggctctagagttgcgcaccataatgaactgactacacaaaacactaaagaaagcttgcattctcttcatggttcagtagatgagaaacatggagatcttacttctaatggcagcaatatcaaagataggaaaggacattttggtccagtgattagtcagaagctacatgaacattttaagacacaaccataccctagtcgttctcttaaagaaagcttggcagaagaactagggctaacatttcatcaggtcaacagatggtttgaaaataggcgtcattttgcaaggttagcttcttccaggaaaggcatcagtccagataagcatagcccccaaaatactaatagcccagtgacacctagtatgcaacctaaagaaccagaggggactgtgatggaagaatctaatgtatgcataaacagggatgctaccatctctaaaaaagcggtttcttcaaaagtcggatcaagaaagaaccttagcaagagttcccctaaaagccgggtcagaagttgattctgccgcggatcagaatctgtggcctgaccttacagagaaggcagggcaggcaaaaagcaatacagcaggagttgaagaagaaaatgggacgatgaagtttgtagacaaagacatgagccagaatttggactgctcctgaaatttgcaggtctatgggccttgaaacttggcttgtatgactctacactggtagccaaaaaacatagatataccattgcaagtcagctagctctcattagatcatgccaatcaactaacaagcacgtcattcagtttttttcttctttttttttcctgtgggggctattgattcccgttctttgccaactgagggcttcctctgatttctgggtcgctctataggtattagctatcctacagatttgtttgcagcaattactgtcattgcaggaagagctcaattacaaaaccctaaggttcagtaacgacagcacgatgctgctatgacaggatgcagaagatgcattgttttcatcgatgttgattttcttgtaagatggaatgttgtaccaaacctgaacagatcactttgttgtgattcagtgtgcggctatggcctatggatttgtacttgttggactcacagagcatcgcgctttacatgcaaacggattttcg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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