2024-03-28 18:19:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001081739 1001 bp mRNA linear MAM 03-FEB-2022 DEFINITION Bos taurus paired related homeobox 1 (PRRX1), mRNA. ACCESSION NM_001081739 XM_866850 VERSION NM_001081739.1 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 1001) AUTHORS Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA and Salzberg SL. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol. 10 (4), R42 (2009) PUBMED 19393038 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC133623.1. On Feb 27, 2007 this sequence version replaced XM_866850.2. ##Evidence-Data-START## Transcript exon combination :: BC133623.1, HX936744.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145413, SAMN03145414 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1001 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="16" /map="16" /breed="Hereford" gene 1..1001 /gene="PRRX1" /note="paired related homeobox 1" /db_xref="BGD:BT11112" /db_xref="GeneID:540901" /db_xref="VGNC:VGNC:33412" CDS 246..983 /gene="PRRX1" /note="paired mesoderm homeobox 1" /codon_start=1 /product="paired mesoderm homeobox protein 1" /protein_id="NP_001075208.1" /db_xref="BGD:BT11112" /db_xref="GeneID:540901" /db_xref="VGNC:VGNC:33412" /translation="
MTSSYGHVLERQPALGGRLDSPSNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADESVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMATYSATCANNNPAQGINMANSIANLRLKAKEYSLQRNQVPTVN"
misc_feature 540..695 /gene="PRRX1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(543..545,663..665,672..677,684..686) /gene="PRRX1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 900..950 /gene="PRRX1" /note="OAR domain; Region: OAR; pfam03826" /db_xref="CDD:427530" ORIGIN
ggaaaagcaaccgaggctgtcgaaagctgctggtgcagaactctctgctcttacagaagggggtcccccgccctctttccactttttttttttttgttcttcccctccttctctctctctctccctctctctctccactccccccctctctctgccccactcggctcctctcccccctcgcgcccacagcgtttggtgttgattcgagcgggaaaggggggtgggtgggatcggaggggaagaccatgacctccagctacgggcacgttctggagcggcaaccggcgctgggcggccgcttggacagcccgagcaacctcgacaccctgcaggctaaaaagaacttctccgtcagtcacctgctagacctggaggaagcgggggacatggtggcggcgcaggcggacgagagcgtgggcgaggcgggccggagcctattggagtcgccgggactcaccagcggcagcgacaccccgcaacaggacaatgatcaactgaactcagaggaaaagaagaagagaaagcagcggaggaacaggacaaccttcaacagcagtcagctgcaggctttggagcgtgtctttgagcggacacactacccagatgcgtttgtgcgagaagaccttgcccgccgggtgaacctcactgaggccagagtgcaggtgtggtttcagaaccgaagagccaaattccgcaggaatgagagagccatgctggccaataaaaatgcttccctcctcaaatcctactcaggagacgtgactgctgtggagcagcccatcgtacctcgtcctgctccaagacccactgattatctctcctgggggacggcctctccgtacagcgccatggctacttattctgccacatgtgccaacaataaccctgcacagggcatcaacatggccaacagcattgccaacctgagactgaaggccaaggaatatagtttacagaggaaccaggtgccaacagtcaactgaggaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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