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2024-03-28 18:19:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001081739            1001 bp    mRNA    linear   MAM 03-FEB-2022
DEFINITION  Bos taurus paired related homeobox 1 (PRRX1), mRNA.
ACCESSION   NM_001081739 XM_866850
VERSION     NM_001081739.1
KEYWORDS    RefSeq.
SOURCE      Bos taurus (cattle)
  ORGANISM  Bos taurus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D,
            Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G,
            Roberts M, Subramanian P, Yorke JA and Salzberg SL.
  TITLE     A whole-genome assembly of the domestic cow, Bos taurus
  JOURNAL   Genome Biol. 10 (4), R42 (2009)
   PUBMED   19393038
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC133623.1.
            
            On Feb 27, 2007 this sequence version replaced XM_866850.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC133623.1, HX936744.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03145413, SAMN03145414
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Bos taurus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9913"
                     /chromosome="16"
                     /map="16"
                     /breed="Hereford"
     gene            1..1001
                     /gene="PRRX1"
                     /note="paired related homeobox 1"
                     /db_xref="BGD:BT11112"
                     /db_xref="GeneID:540901"
                     /db_xref="VGNC:VGNC:33412"
     CDS             246..983
                     /gene="PRRX1"
                     /note="paired mesoderm homeobox 1"
                     /codon_start=1
                     /product="paired mesoderm homeobox protein 1"
                     /protein_id="NP_001075208.1"
                     /db_xref="BGD:BT11112"
                     /db_xref="GeneID:540901"
                     /db_xref="VGNC:VGNC:33412"
                     /translation="
MTSSYGHVLERQPALGGRLDSPSNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADESVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMATYSATCANNNPAQGINMANSIANLRLKAKEYSLQRNQVPTVN"
     misc_feature    540..695
                     /gene="PRRX1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(543..545,663..665,672..677,684..686)
                     /gene="PRRX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    900..950
                     /gene="PRRX1"
                     /note="OAR domain; Region: OAR; pfam03826"
                     /db_xref="CDD:427530"
ORIGIN      
ggaaaagcaaccgaggctgtcgaaagctgctggtgcagaactctctgctcttacagaagggggtcccccgccctctttccactttttttttttttgttcttcccctccttctctctctctctccctctctctctccactccccccctctctctgccccactcggctcctctcccccctcgcgcccacagcgtttggtgttgattcgagcgggaaaggggggtgggtgggatcggaggggaagaccatgacctccagctacgggcacgttctggagcggcaaccggcgctgggcggccgcttggacagcccgagcaacctcgacaccctgcaggctaaaaagaacttctccgtcagtcacctgctagacctggaggaagcgggggacatggtggcggcgcaggcggacgagagcgtgggcgaggcgggccggagcctattggagtcgccgggactcaccagcggcagcgacaccccgcaacaggacaatgatcaactgaactcagaggaaaagaagaagagaaagcagcggaggaacaggacaaccttcaacagcagtcagctgcaggctttggagcgtgtctttgagcggacacactacccagatgcgtttgtgcgagaagaccttgcccgccgggtgaacctcactgaggccagagtgcaggtgtggtttcagaaccgaagagccaaattccgcaggaatgagagagccatgctggccaataaaaatgcttccctcctcaaatcctactcaggagacgtgactgctgtggagcagcccatcgtacctcgtcctgctccaagacccactgattatctctcctgggggacggcctctccgtacagcgccatggctacttattctgccacatgtgccaacaataaccctgcacagggcatcaacatggccaacagcattgccaacctgagactgaaggccaaggaatatagtttacagaggaaccaggtgccaacagtcaactgaggaaaaaaaaaaaaaaaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]