2024-04-18 18:56:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001007985 1487 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus H6 family homeobox 3 (HMX3), mRNA. ACCESSION NM_001007985 XM_426755 VERSION NM_001007985.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 1487) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 1487) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1487) AUTHORS Herbrand H, Guthrie S, Hadrys T, Hoffmann S, Arnold HH, Rinkwitz-Brandt S and Bober E. TITLE Two regulatory genes, cNkx5-1 and cPax2, show different responses to local signals during otic placode and vesicle formation in the chick embryo JOURNAL Development 125 (4), 645-654 (1998) PUBMED 9435285 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000232.1. On Nov 18, 2021 this sequence version replaced NM_001007985.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA103992323, SAMEA103992428 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-509 JAENSK010000232.1 11500589-11501097 510-1487 JAENSK010000232.1 11501281-11502258 FEATURES Location/Qualifiers source 1..1487 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="6" /map="6" gene 1..1487 /gene="HMX3" /gene_synonym="NKX5-1" /note="H6 family homeobox 3" /db_xref="CGNC:16346" /db_xref="GeneID:429199" exon 1..509 /gene="HMX3" /gene_synonym="NKX5-1" /inference="alignment:Splign:2.1.0" CDS 194..1120 /gene="HMX3" /gene_synonym="NKX5-1" /note="NK homeobox; homeo box (H6 family) 3; cNkx5-1; homeobox protein Nkx-5.1; homeobox protein H6 family member 3; homeobox (H6 family) 3" /codon_start=1 /product="homeobox protein HMX3" /protein_id="NP_001007986.2" /db_xref="CGNC:16346" /db_xref="GeneID:429199" /translation="
MPETGQEPPSAPPPPPPPKESFYIKNLLNGDPPKAAPKQPRALFAPSGKADGSGFALSQVGDLSFPRFEIPAPRFALSAHCLERAQTWWYPYALTPAGAHLPRTEAAEKSLLRDSSPASGTDRDSPEPLLQGGDAEQKERDPKSPAEIVLEESDSEEGKKEGGAEDWKKREESPEKKPCRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSGAESSAAGGGGPGPQPLLTFPHPVYYSHPVVTSVPLLRPV"
misc_feature 194..364 /gene="HMX3" /gene_synonym="NKX5-1" /note="propagated from UniProtKB/Swiss-Prot (O57601.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 512..745 /gene="HMX3" /gene_synonym="NKX5-1" /note="propagated from UniProtKB/Swiss-Prot (O57601.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(737..751,755..757,806..808,824..826,863..865, 869..874,881..886,890..898,902..907) /gene="HMX3" /gene_synonym="NKX5-1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 743..904 /gene="HMX3" /gene_synonym="NKX5-1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(743..745,752..754,872..874,881..886,893..895) /gene="HMX3" /gene_synonym="NKX5-1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 510..1487 /gene="HMX3" /gene_synonym="NKX5-1" /inference="alignment:Splign:2.1.0" ORIGIN
ctctccctccgcctgcccgcggcagcgcccggtgccgcgcggctcccctcggccccccgcgctgccgcccccccatgcgaggggcccccggccgggcccgccgcgctcccccgccgcgccgccgccgcgcctctcccccgcgccgccgggagccgccacccgcggcgggcaggaagcgggcgggcagcggaggatgccggagaccgggcaggagccgcccagcgccccgccgccgccgccccctcccaaggagtccttctacatcaagaacctgctcaacggagacccccccaaagcggcccccaagcagccgagggctctgttcgccccttcgggcaaagcggacggctccggcttcgccctctcgcaggtgggagatctctcctttccccgcttcgagatcccggcgccgcgcttcgctctgagcgcgcactgcctggagcgagcccagacctggtggtacccctacgcgctgacgccggccggagcccacctgccccgcaccgaagccgcggagaaatccctcctgcgggactcgtcccccgcgtcgggcaccgacagggactccccggagccgctgctccaggggggggacgcggaacagaaggagcgggaccccaagagccccgccgagatcgtgctggaggagagcgactcggaggaggggaagaaggagggcggcgcggaggactggaagaagcgggaggagagccccgagaagaagccgtgccgcaagaagaagacgcgcacggtgttcagccgcagccaggtcttccagctcgagtccaccttcgacatgaagcgctacctgagcagctcggagcgggccggcctggccgcttcgctgcacctcacagagacccaggtgaagatctggttccagaaccgccgcaacaagtggaagcggcagctggcggccgagctggaggcggccaacctcagccacgcggccgcgcagcgcatcgtgcgcgtccccatcctctaccacgagaactcgggcgcggagagcagcgcggcgggaggcggcggccccggcccgcagcctctgctcaccttcccccaccccgtttattactcccaccccgtggtcacctccgtaccgctcctgcggcccgtctgagccccgcgcggagcggcgcggagccgcccgtaagtagcgctgcggccctacagccggagccggggagaggggagcggggggggggggggggcaccgggggttaaaggggagggaggtgtgaggagggtaaggaaaggatgaaaaagtgtaacaagaaaataattcgggagcaaaagtggggaagaggggggaaggaaaacgaaagcgggcactgtagggcaccccggggctgtcacacgttttgtaaccgcaaacacacaccgcgatggtctctgtggctttaggtttatttttgtacaaaagaaaaattaaaaaaaaaaaagataataataataataataattaaaaaacaaaaagatcccacgcc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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