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2024-11-21 22:35:09, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Homo sapiens vimentin (VIM), mRNA. (2154 bp)
LOCUS NM_003380 2154 bp mRNA linear PRI 13-MAY-2024 DEFINITION Homo sapiens vimentin (VIM), mRNA. ACCESSION NM_003380 VERSION NM_003380.5 KEYWORDS RefSeq; MANE Select. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from DA980400.1, BQ050765.1 and BC000163.2. This sequence is a reference standard in the RefSeqGene project. On...
NM_003380.5 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens VIM antisense RNA 1 (VIM-AS1), transcript variant 2, long non-coding RNA. (1359 bp)
LOCUS NR_108060 1359 bp RNA linear PRI 12-FEB-2023 DEFINITION Homo sapiens VIM antisense RNA 1 (VIM-AS1), transcript variant 2, long non-coding RNA. ACCESSION NR_108060 VERSION NR_108060.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BG492614.1, AL133415.13 and H08157.1. Transcript...
NR_108060.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens VIM antisense RNA 1 (VIM-AS1), transcript variant 1, long non-coding RNA. (1883 bp)
LOCUS NR_108061 1883 bp RNA linear PRI 12-FEB-2023 DEFINITION Homo sapiens VIM antisense RNA 1 (VIM-AS1), transcript variant 1, long non-coding RNA. ACCESSION NR_108061 VERSION NR_108061.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BM923888.1, BG492614.1, AL133415.13 and H08157.1....
NR_108061.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens selenoprotein S (SELENOS), transcript variant 1, mRNA. (1218 bp)
BG829960.1 36-77 43-1214 BC005840.2 1-1172 1215-1218 AK097011.1 2440-2443 FEATURES Location/Qualifiers source 1..1218 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="15" /map="15q26.3" gene 1..1218 /gene="SELENOS" /gene_synonym="AD-015; ADO15; SBBI8; SELS; SEPS1; VIMP" /note="selenoprotein S" /db_xref="GeneID:55829" /db_xref="HGNC:HGNC:30396" /db_xref="MIM:607918" exon 1..144 /gene="SELENOS" /gene_synonym="AD-015; ADO15; SBBI8; SELS; SEPS1; VIMP" /inference="alignment:Splign:2.1.0" variation 2 /gene="SELENOS" /gene_synonym="AD-015; ADO15; SBBI8; SELS; SEPS1; VIMP...
Synonym: AD-015; ADO15; SBBI8; SELS; SEPS1; VIMP
NM_018445.6 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens selenoprotein S (SELENOS), transcript variant 2, mRNA. (1482 bp)
DW430970.1 160-271 1383-1482 AC023024.6 78199-78298 c FEATURES Location/Qualifiers source 1..1482 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="15" /map="15q26.3" gene 1..1482 /gene="SELENOS" /gene_synonym="AD-015; ADO15; SBBI8; SELS; SEPS1; VIMP" /note="selenoprotein S" /db_xref="GeneID:55829" /db_xref="HGNC:HGNC:30396" /db_xref="MIM:607918" exon 1..144 /gene="SELENOS" /gene_synonym="AD-015; ADO15; SBBI8; SELS; SEPS1; VIMP" /inference="alignment:Splign:2.1.0" variation 2 /gene="SELENOS" /gene_synonym="AD-015; ADO15; SBBI8; SELS; SEPS1; VIMP" /replace="a" /...
Synonym: AD-015; ADO15; SBBI8; SELS; SEPS1; VIMP
NM_203472.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/symbol%3aVIM
lang : en | div : | spe : hs | query_string : symbol:VIM | format : html | download : 

0.000 | 0.000 | search_start;
0.151 | 0.150 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Homo sapiens (human)?to=0&format=json
0.258 | 0.108 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.259 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]