GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-12-04 02:58:11, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Homo sapiens uncharacterized lncRNA (LOC124904159), ncRNA. (3443 bp)
ggatcacttcccaaccctgagataaagccacatgtgcaacatgttccaacatgtgcaacagcttccaacacaggccgtaagtgcccattgcaagacgggtactgacagtgcatgttggagctgctctggcctgggtttctggttctgactccatcacttacctggcgtgtgactctgagtctctgatgcctttctctgggcttctttttcccatcagtaaactgagaggattgatgcctttgctcttcaagcccctcttttccagcatgggccttctagttcctacaggttagaggtcagtgtgacctgggagcagtgatggttctgtgcacctggtgggtaattatccttgttaaagacggctgggcattaagcatagcccagagaacttagggtcacacatgacttagtggctgagtcaggatgagaagaaagtcaggcctcctggtccctcaccagcgcccgctgccctaccccagcaccccctgccctaccccagcagctatcctgaccctctctctgggcataggtatcagtgcttcattgatacaaccctgtgttcctccttgaagttgtcttgccatttcccaagtcatctgc...
position 812
XR_007066027.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 3, mRNA. (5150 bp)
ccccatcatgcaaccagtggtttaatccatgtaccaataggggctagtaccacagaggcctcctgtggtgccctcgtatcataccacctgttcctgtggagagggaatgaccggcactgaaggtaccttacaactggctcatattatcagaggaccttggtcctttctaaatctctagtctctcttcatatccttcatcaggtgttttaagatgtctctgagaagccatcaaggcaaaagagaactttaagttccttgttccagcccggagttttgggaaagaaagaaaggaaaggtcacagtgacctaggattggaaccttcctgcccttttggcttgcagactgccttctatcccagaacagctgagaaatctatgaagctgagattctgaaggacccagcttaggttcttccacttaggcctcaattcccttccttttccaggggcagccttagttcccatggccctgaaacacacacatttcccccttcctttcccagaagccactggccccccatagcacccagtgcatcctttttacaagtggaagaactaggatggctttccaaagtcttctagaaatgaagttctttctctg...
position 2466
NM_001252037.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 2, mRNA. (5263 bp)
ccccatcatgcaaccagtggtttaatccatgtaccaataggggctagtaccacagaggcctcctgtggtgccctcgtatcataccacctgttcctgtggagagggaatgaccggcactgaaggtaccttacaactggctcatattatcagaggaccttggtcctttctaaatctctagtctctcttcatatccttcatcaggtgttttaagatgtctctgagaagccatcaaggcaaaagagaactttaagttccttgttccagcccggagttttgggaaagaaagaaaggaaaggtcacagtgacctaggattggaaccttcctgcccttttggcttgcagactgccttctatcccagaacagctgagaaatctatgaagctgagattctgaaggacccagcttaggttcttccacttaggcctcaattcccttccttttccaggggcagccttagttcccatggccctgaaacacacacatttcccccttcctttcccagaagccactggccccccatagcacccagtgcatcctttttacaagtggaagaactaggatggctttccaaagtcttctagaaatgaagttctttctctg...
position 2579
NM_001252036.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 1, mRNA. (5273 bp)
ccccatcatgcaaccagtggtttaatccatgtaccaataggggctagtaccacagaggcctcctgtggtgccctcgtatcataccacctgttcctgtggagagggaatgaccggcactgaaggtaccttacaactggctcatattatcagaggaccttggtcctttctaaatctctagtctctcttcatatccttcatcaggtgttttaagatgtctctgagaagccatcaaggcaaaagagaactttaagttccttgttccagcccggagttttgggaaagaaagaaaggaaaggtcacagtgacctaggattggaaccttcctgcccttttggcttgcagactgccttctatcccagaacagctgagaaatctatgaagctgagattctgaaggacccagcttaggttcttccacttaggcctcaattcccttccttttccaggggcagccttagttcccatggccctgaaacacacacatttcccccttcctttcccagaagccactggccccccatagcacccagtgcatcctttttacaagtggaagaactaggatggctttccaaagtcttctagaaatgaagttctttctctg...
position 2589
NM_002868.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 4, mRNA. (5376 bp)
ccccatcatgcaaccagtggtttaatccatgtaccaataggggctagtaccacagaggcctcctgtggtgccctcgtatcataccacctgttcctgtggagagggaatgaccggcactgaaggtaccttacaactggctcatattatcagaggaccttggtcctttctaaatctctagtctctcttcatatccttcatcaggtgttttaagatgtctctgagaagccatcaaggcaaaagagaactttaagttccttgttccagcccggagttttgggaaagaaagaaaggaaaggtcacagtgacctaggattggaaccttcctgcccttttggcttgcagactgccttctatcccagaacagctgagaaatctatgaagctgagattctgaaggacccagcttaggttcttccacttaggcctcaattcccttccttttccaggggcagccttagttcccatggccctgaaacacacacatttcccccttcctttcccagaagccactggccccccatagcacccagtgcatcctttttacaagtggaagaactaggatggctttccaaagtcttctagaaatgaagttctttctctg...
position 2692
NM_001414457.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant 5, mRNA. (5576 bp)
ccccatcatgcaaccagtggtttaatccatgtaccaataggggctagtaccacagaggcctcctgtggtgccctcgtatcataccacctgttcctgtggagagggaatgaccggcactgaaggtaccttacaactggctcatattatcagaggaccttggtcctttctaaatctctagtctctcttcatatccttcatcaggtgttttaagatgtctctgagaagccatcaaggcaaaagagaactttaagttccttgttccagcccggagttttgggaaagaaagaaaggaaaggtcacagtgacctaggattggaaccttcctgcccttttggcttgcagactgccttctatcccagaacagctgagaaatctatgaagctgagattctgaaggacccagcttaggttcttccacttaggcctcaattcccttccttttccaggggcagccttagttcccatggccctgaaacacacacatttcccccttcctttcccagaagccactggccccccatagcacccagtgcatcctttttacaagtggaagaactaggatggctttccaaagtcttctagaaatgaagttctttctctg...
position 2892
NM_001414458.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens chromosome 16 open reading frame 87 (C16orf87), transcript variant 2, mRNA. (6662 bp)
ttccaaaatgtttttgtgggcactttaatacttgtagtttgattttgtttgttagttttagaaatgaacatttcttagattttcatgggtattttttggctgtatttaaatgtaaatgatataaaagtaagggaaattgtgcaaattatttcttgtgtagtaatcagtggaagtgatcaaacagcttgaagcagtttatgatgagaaaatttaaaattgcaaatgacctgaaaatttagccagtctattcttatttctttaaatttcagaaatacttaagaaaaaaaaaaaaaaggtcagtatgacctctgagttgcttcctaaaagtaatcagatagtgttctccctcagataagatttcaaattgaaaagtatttgacttctttaactctagtaattgcacttgattctctaattctgatcattaaaatgacttggcaatatttaattttggcttgcctttcaatctgcatgtttgtcttaaatttagaaaaattaagctctttacttacttttatataaagtattaattggccaggcatggtggcttacacctgtaatcccaacactttgggaggccaaggcaggagagttgtttga...
position 3088
NM_001348660.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens chromosome 16 open reading frame 87 (C16orf87), transcript variant 3, mRNA. (6773 bp)
ttccaaaatgtttttgtgggcactttaatacttgtagtttgattttgtttgttagttttagaaatgaacatttcttagattttcatgggtattttttggctgtatttaaatgtaaatgatataaaagtaagggaaattgtgcaaattatttcttgtgtagtaatcagtggaagtgatcaaacagcttgaagcagtttatgatgagaaaatttaaaattgcaaatgacctgaaaatttagccagtctattcttatttctttaaatttcagaaatacttaagaaaaaaaaaaaaaaggtcagtatgacctctgagttgcttcctaaaagtaatcagatagtgttctccctcagataagatttcaaattgaaaagtatttgacttctttaactctagtaattgcacttgattctctaattctgatcattaaaatgacttggcaatatttaattttggcttgcctttcaatctgcatgtttgtcttaaatttagaaaaattaagctctttacttacttttatataaagtattaattggccaggcatggtggcttacacctgtaatcccaacactttgggaggccaaggcaggagagttgtttga...
position 3199
NM_001348661.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens chromosome 16 open reading frame 87 (C16orf87), transcript variant 1, mRNA. (6845 bp)
ttccaaaatgtttttgtgggcactttaatacttgtagtttgattttgtttgttagttttagaaatgaacatttcttagattttcatgggtattttttggctgtatttaaatgtaaatgatataaaagtaagggaaattgtgcaaattatttcttgtgtagtaatcagtggaagtgatcaaacagcttgaagcagtttatgatgagaaaatttaaaattgcaaatgacctgaaaatttagccagtctattcttatttctttaaatttcagaaatacttaagaaaaaaaaaaaaaaggtcagtatgacctctgagttgcttcctaaaagtaatcagatagtgttctccctcagataagatttcaaattgaaaagtatttgacttctttaactctagtaattgcacttgattctctaattctgatcattaaaatgacttggcaatatttaattttggcttgcctttcaatctgcatgtttgtcttaaatttagaaaaattaagctctttacttacttttatataaagtattaattggccaggcatggtggcttacacctgtaatcccaacactttgggaggccaaggcaggagagttgtttga...
position 3271
NM_001001436.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RAB5B, member RAS oncogene family (RAB5B), transcript variant X1, mRNA. (7256 bp)
ccccatcatgcaaccagtggtttaatccatgtaccaataggggctagtaccacagaggcctcctgtggtgccctcgtatcataccacctgttcctgtggagagggaatgaccggcactgaaggtaccttacaactggctcatattatcagaggaccttggtcctttctaaatctctagtctctcttcatatccttcatcaggtgttttaagatgtctctgagaagccatcaaggcaaaagagaactttaagttccttgttccagcccggagttttgggaaagaaagaaaggaaaggtcacagtgacctaggattggaaccttcctgcccttttggcttgcagactgccttctatcccagaacagctgagaaatctatgaagctgagattctgaaggacccagcttaggttcttccacttaggcctcaattcccttccttttccaggggcagccttagttcccatggccctgaaacacacacatttcccccttcctttcccagaagccactggccccccatagcacccagtgcatcctttttacaagtggaagaactaggatggctttccaaagtcttctagaaatgaagttctttctctg...
position 4572
XM_054372781.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens chromosome 16 open reading frame 87 (C16orf87), transcript variant 4, non-coding RNA. (6668 bp)
ttccaaaatgtttttgtgggcactttaatacttgtagtttgattttgtttgttagttttagaaatgaacatttcttagattttcatgggtattttttggctgtatttaaatgtaaatgatataaaagtaagggaaattgtgcaaattatttcttgtgtagtaatcagtggaagtgatcaaacagcttgaagcagtttatgatgagaaaatttaaaattgcaaatgacctgaaaatttagccagtctattcttatttctttaaatttcagaaatacttaagaaaaaaaaaaaaaaggtcagtatgacctctgagttgcttcctaaaagtaatcagatagtgttctccctcagataagatttcaaattgaaaagtatttgacttctttaactctagtaattgcacttgattctctaattctgatcattaaaatgacttggcaatatttaattttggcttgcctttcaatctgcatgtttgtcttaaatttagaaaaattaagctctttacttacttttatataaagtattaattggccaggcatggtggcttacacctgtaatcccaacactttgggaggccaaggcaggagagttgtttga...
position 3094
NR_145834.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens chromosome 16 open reading frame 87 (C16orf87), transcript variant 6, non-coding RNA. (6808 bp)
ttccaaaatgtttttgtgggcactttaatacttgtagtttgattttgtttgttagttttagaaatgaacatttcttagattttcatgggtattttttggctgtatttaaatgtaaatgatataaaagtaagggaaattgtgcaaattatttcttgtgtagtaatcagtggaagtgatcaaacagcttgaagcagtttatgatgagaaaatttaaaattgcaaatgacctgaaaatttagccagtctattcttatttctttaaatttcagaaatacttaagaaaaaaaaaaaaaaggtcagtatgacctctgagttgcttcctaaaagtaatcagatagtgttctccctcagataagatttcaaattgaaaagtatttgacttctttaactctagtaattgcacttgattctctaattctgatcattaaaatgacttggcaatatttaattttggcttgcctttcaatctgcatgtttgtcttaaatttagaaaaattaagctctttacttacttttatataaagtattaattggccaggcatggtggcttacacctgtaatcccaacactttgggaggccaaggcaggagagttgtttga...
position 3234
NR_145836.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens chromosome 16 open reading frame 87 (C16orf87), transcript variant 5, non-coding RNA. (6974 bp)
ttccaaaatgtttttgtgggcactttaatacttgtagtttgattttgtttgttagttttagaaatgaacatttcttagattttcatgggtattttttggctgtatttaaatgtaaatgatataaaagtaagggaaattgtgcaaattatttcttgtgtagtaatcagtggaagtgatcaaacagcttgaagcagtttatgatgagaaaatttaaaattgcaaatgacctgaaaatttagccagtctattcttatttctttaaatttcagaaatacttaagaaaaaaaaaaaaaaggtcagtatgacctctgagttgcttcctaaaagtaatcagatagtgttctccctcagataagatttcaaattgaaaagtatttgacttctttaactctagtaattgcacttgattctctaattctgatcattaaaatgacttggcaatatttaattttggcttgcctttcaatctgcatgtttgtcttaaatttagaaaaattaagctctttacttacttttatataaagtattaattggccaggcatggtggcttacacctgtaatcccaacactttgggaggccaaggcaggagagttgtttga...
position 3400
NR_145835.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens chromosome 16 open reading frame 87 (C16orf87), transcript variant 7, non-coding RNA. (7162 bp)
ttccaaaatgtttttgtgggcactttaatacttgtagtttgattttgtttgttagttttagaaatgaacatttcttagattttcatgggtattttttggctgtatttaaatgtaaatgatataaaagtaagggaaattgtgcaaattatttcttgtgtagtaatcagtggaagtgatcaaacagcttgaagcagtttatgatgagaaaatttaaaattgcaaatgacctgaaaatttagccagtctattcttatttctttaaatttcagaaatacttaagaaaaaaaaaaaaaaggtcagtatgacctctgagttgcttcctaaaagtaatcagatagtgttctccctcagataagatttcaaattgaaaagtatttgacttctttaactctagtaattgcacttgattctctaattctgatcattaaaatgacttggcaatatttaattttggcttgcctttcaatctgcatgtttgtcttaaatttagaaaaattaagctctttacttacttttatataaagtattaattggccaggcatggtggcttacacctgtaatcccaacactttgggaggccaaggcaggagagttgtttga...
position 3588
NR_145837.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens Rho GTPase activating protein 26 (ARHGAP26), transcript variant X36, mRNA. (8377 bp)
t" /db_xref="dbSNP:1479933364" ORIGIN // agtgttaataatcccagaacagttagcctgtgcctaattcaccagaaccaaaaacaagttaaaataaatggcctactccttcactggttattggggtgtgacctaccacctacatgctccaggaggagctgtttcaccttttctcttgaaactatatcagcttaatttgaaatttctcacagagaactgcggtaagtgccagtgacactcaaaatgtgaaagcattgccataaggataatttgctcatcaaggtcatcatgacctgcctctgacctgcagagaaagacccagacgaaggaatgcgcatccttaagccccttgtcctttaatgaggaataatttcttggacactgaatatatgcaaacatttagatgccgcatagatcacttcccctaaaccctgccccatagaaatgtaaaattaaccttgattggagattggaaatgataagaatgaaaaattttatttggaagtattaaattctgtagaatatagactgtaggagcagtaagagatcaaagaaacgagagattaaggttgtctgcagccatcaagta...
position 251
Synonym: GRAF; GRAF1; OPHN1L; OPHN1L1
XM_047416992.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens succinyl-CoA:glutarate-CoA transferase (SUGCT), transcript variant X7, misc_RNA. (9537 bp)
attgaaaaacatgttcaggcttccagactcaaatatgtttcctttgctcataaccctctggtgagggaacaaatggttttggatccctggagagatgggatgtccctttatgactgagtttccctgaactcagtggggtgctgtgggctctctggatgccattatgatgaggctggagatgctccttgcttggctaaatcctcacatgttaatatttggcccgcctgttccgcagtgattgatattaagggatgagagtttttcctgaattttttcccgcatttttcaagcagaggtcacaatgacctgctgagaaggcaagaatggctatagcaatttagaagaaacatgacaatcacctcttgcttggtagaaacaggcaagggagtgatagccccaaaggaggagagagactggttattctaaagagtgcaatggagtcacaaagtatgaatgagcaggagagtagttggggatgagagatgtggagtaggacttatcgttactttacagtttgtggtttgttaatctgaactcttcttctctgccccaaagggaatctttcatctgtcatagtggttaagagcagagccttggtgt...
position 4003
Synonym: C7orf10; DERP13; GA3; ORF19
XR_008487755.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens succinyl-CoA:glutarate-CoA transferase (SUGCT), transcript variant X12, mRNA. (9638 bp)
attgaaaaacatgttcaggcttccagactcaaatatgtttcctttgctcataaccctctggtgagggaacaaatggttttggatccctggagagatgggatgtccctttatgactgagtttccctgaactcagtggggtgctgtgggctctctggatgccattatgatgaggctggagatgctccttgcttggctaaatcctcacatgttaatatttggcccgcctgttccgcagtgattgatattaagggatgagagtttttcctgaattttttcccgcatttttcaagcagaggtcacaatgacctgctgagaaggcaagaatggctatagcaatttagaagaaacatgacaatcacctcttgcttggtagaaacaggcaagggagtgatagccccaaaggaggagagagactggttattctaaagagtgcaatggagtcacaaagtatgaatgagcaggagagtagttggggatgagagatgtggagtaggacttatcgttactttacagtttgtggtttgttaatctgaactcttcttctctgccccaaagggaatctttcatctgtcatagtggttaagagcagagccttggtgt...
position 4104
Synonym: C7orf10; DERP13; GA3; ORF19
XM_054359018.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens NOP protein chaperone 1 (NOPCHAP1), mRNA. (23524 bp)
atttttattttaagaattcctttctagtttgagttggaaaactgatgcttgtagtgtaatcactgttggtgacagtgcagtcatacaatgcatgcagaatttactggttggaaagatcagtttttagttgatttttttttttttgtaaagcaaaacttcttatctcagctattaaaactgttccacacagttgcccacagcctgaaacctatcaaatgtagaaaatagggacatcacagcaaaatttggagggcatagtacaaagaaaggcgacagctggttttcccttccaaaggtcaaaatgacctcaggctggagttgcctttctgccctattcttggttttattaagtttatttgggatctcatctgccatgagcctgacttttgctcaggaaagaggcctgagaatttaaggactatctgtgagtgggcagagctgatggaactttgtctgctaatgttttcgggttttctttgaattctgttctttccaattcttcacattggcctgagtcttcttgtgattgctgtgaagataattatccaggtcctttctgatctttcttattggaaattggaaccagctctccttgactgt...
position 20724
Synonym: C12orf45; DDSR1
NM_152318.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

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0.000 | 0.000 | search_start;
0.118 | 0.118 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct))?source=Homo sapiens (human)?to=0&format=json
0.472 | 0.354 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct))?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.489 | 0.016 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]