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2024-11-21 22:01:47, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Homo sapiens pannexin 1 (PANX1), transcript variant X2, mRNA. (2283 bp)
ttacttcagcctctcctcactctcagacgagtttgtgtgcagcatcaaatcagggatcctgagaaacgacagcaccgtgcccgatcagtttcagtgcaaactcattgccgtgggcatcttccagttgctcagtgtcattaaccttgtggtttatgtcctgctggctcccgtggttgtctacacgctgtttgttccattccgacagaagacagatgttctcaaagtgtacgaaatcctccccacttttgatgttctgcatttcaaatctgaagggtacaacgatttgagcctctacaatctcttcttggaggaaaatataagtgaggtcaagtcatacaagtgtcttaaggtactggagaatattaagagcagtggtcaggggatcgacccaatgctactcctgacaaaccttggcatgatcaagatggatgttgttgatggcaaaactcccatgtctgcagagatgagagaggagcaggggaaccagacggcagagctccaaggtatgaacatagacagtgaaactaaagcaaataatggagagaagaatgcccgacagagacttctggattcttcttgctgatgatttttttccttgag...
position 896
Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
XM_054368281.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens pannexin 1 (PANX1), transcript variant X2, mRNA. (2283 bp)
ttacttcagcctctcctcactctcagacgagtttgtgtgcagcatcaaatcagggatcctgagaaacgacagcaccgtgcccgatcagtttcagtgcaaactcattgccgtgggcatcttccagttgctcagtgtcattaaccttgtggtttatgtcctgctggctcccgtggttgtctacacgctgtttgttccattccgacagaagacagatgttctcaaagtgtacgaaatcctccccacttttgatgttctgcatttcaaatctgaagggtacaacgatttgagcctctacaatctcttcttggaggaaaatataagtgaggtcaagtcatacaagtgtcttaaggtactggagaatattaagagcagtggtcaggggatcgacccaatgctactcctgacaaaccttggcatgatcaagatggatgttgttgatggcaaaactcccatgtctgcagagatgagagaggagcaggggaaccagacggcagagctccaaggtatgaacatagacagtgaaactaaagcaaataatggagagaagaatgcccgacagagacttctggattcttcttgctgatgatttttttccttgag...
position 896
Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
XM_047426702.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens pannexin 1 (PANX1), transcript variant X1, mRNA. (2373 bp)
ttacttcagcctctcctcactctcagacgagtttgtgtgcagcatcaaatcagggatcctgagaaacgacagcaccgtgcccgatcagtttcagtgcaaactcattgccgtgggcatcttccagttgctcagtgtcattaaccttgtggtttatgtcctgctggctcccgtggttgtctacacgctgtttgttccattccgacagaagacagatgttctcaaagtgtacgaaatcctccccacttttgatgttctgcatttcaaatctgaagggtacaacgatttgagcctctacaatctcttcttggaggaaaatataagtgaggtcaagtcatacaagtgtcttaaggtactggagaatattaagagcagtggtcaggggatcgacccaatgctactcctgacaaaccttggcatgatcaagatggatgttgttgatggcaaaactcccatgtctgcagagatgagagaggagcaggggaaccagacggcagagctccaaggtatgaacatagacagtgaaactaaagcaaataatggagagaagaatgcccgacagagacttctggattcttcttgctgatgatttttttccttgag...
position 986
Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
XM_054368280.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens pannexin 1 (PANX1), transcript variant X1, mRNA. (2373 bp)
ttacttcagcctctcctcactctcagacgagtttgtgtgcagcatcaaatcagggatcctgagaaacgacagcaccgtgcccgatcagtttcagtgcaaactcattgccgtgggcatcttccagttgctcagtgtcattaaccttgtggtttatgtcctgctggctcccgtggttgtctacacgctgtttgttccattccgacagaagacagatgttctcaaagtgtacgaaatcctccccacttttgatgttctgcatttcaaatctgaagggtacaacgatttgagcctctacaatctcttcttggaggaaaatataagtgaggtcaagtcatacaagtgtcttaaggtactggagaatattaagagcagtggtcaggggatcgacccaatgctactcctgacaaaccttggcatgatcaagatggatgttgttgatggcaaaactcccatgtctgcagagatgagagaggagcaggggaaccagacggcagagctccaaggtatgaacatagacagtgaaactaaagcaaataatggagagaagaatgcccgacagagacttctggattcttcttgctgatgatttttttccttgag...
position 986
Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
XM_011542734.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens pannexin 1 (PANX1), mRNA. (2852 bp)
ttacttcagcctctcctcactctcagacgagtttgtgtgcagcatcaaatcagggatcctgagaaacgacagcaccgtgcccgatcagtttcagtgcaaactcattgccgtgggcatcttccagttgctcagtgtcattaaccttgtggtttatgtcctgctggctcccgtggttgtctacacgctgtttgttccattccgacagaagacagatgttctcaaagtgtacgaaatcctccccacttttgatgttctgcatttcaaatctgaagggtacaacgatttgagcctctacaatctcttcttggaggaaaatataagtgaggtcaagtcatacaagtgtcttaaggtactggagaatattaagagcagtggtcaggggatcgacccaatgctactcctgacaaaccttggcatgatcaagatggatgttgttgatggcaaaactcccatgtctgcagagatgagagaggagcaggggaaccagacggcagagctccaaggtatgaacatagacagtgaaactaaagcaaataatggagagaagaatgcccgacagagacttctggattcttcttgctgatgatttttttccttgag...
position 1465
Synonym: MRS1; OOMD7; OZEMA7; PX1; UNQ2529
NM_015368.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens uncharacterized lncRNA (LOC124900807), ncRNA. (5660 bp)
tgtacaaagaatacgagcctggattgtgtgctaaattcctgcttttgctcacttaccccttatagacagcataaaggaggactcttggtcagatatttgtagaggtggctatagttccctttatttgcctaaacttgctgagtttcttaagagggatgcaatgggtgttcaaatggaacaattctcaccgtggtggcttcagtattgcaaggtgttaaacaccccatcctactaaatgccacaatcactttccatccattgtgatacccaccatgtgataactctgcacatttccaatctcttcttggaaagtggtatacgcatacacccctgaagtcttcccctagccccagccaccaccatataagaaccactggcctaggatatgtgggttcggttatctgaatctcaattacagaaaatcaacagcacttctggtagtagaaggtaacccagttaagaattaaaaagtatagactgtagtttgaatactgaatcttttggaaaatcattgaattatttgaacctcagtttactcatctattaagtggtaatccaccctctctcccatttaagccacttaattcttgtgaaaatcaa...
position 2268
XR_007058359.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens uncharacterized lncRNA (LOC124900807), ncRNA. (5661 bp)
tgtacaaagaatacgagcctggattgtgtgctaaattcctgcttttgctcacttaccccttatagacagcataaaggaggactcttggtcagatatttgtagaggtggctatagttccctttatttgcctaaacttgctgagtttcttaagagggatgcaatgggtgttcaaatggaacaattctcaccgtggtggcttcagtattgcaaggtgttaaacaccccatcctactaaatgccacaatcacttttcatccattgtgatacccaccatgtgataactctgcacatttccaatctcttcttggaaagtggtatacgcatacacccctgaagtcttcccctagccccagccaccaccatataagaaccactggcctaggatatgtgggttcggttatctgaatctcaattacagaaaatcaacagcacttctggtagtagaaggtaacccagttaagaattaagaagtatagactgtagtttgaatactgaatcttttggaaaatcattgaattatttgaacctcagtttactcatctattaagtggtaatccaccctctctcccatttaagccacttaattcttgtgaaaatcaa...
position 2269
XR_007075129.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/comp%3acaagaagagattg
lang : en | div : | spe : hs | query_string : comp:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.083 | 0.083 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Homo sapiens (human)?to=0&format=json
0.159 | 0.077 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.161 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]