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2024-04-29 05:39:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_008487755            9537 bp    RNA     linear   PRI 05-OCT-2023
DEFINITION  PREDICTED: Homo sapiens succinyl-CoA:glutarate-CoA transferase
            (SUGCT), transcript variant X7, misc_RNA.
ACCESSION   XR_008487755
VERSION     XR_008487755.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060931) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/02/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9537
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="7"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..9537
                     /gene="SUGCT"
                     /gene_synonym="C7orf10; DERP13; GA3; ORF19"
                     /note="succinyl-CoA:glutarate-CoA transferase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 4 ESTs, 34 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:79783"
                     /db_xref="HGNC:HGNC:16001"
                     /db_xref="MIM:609187"
     misc_RNA        1..9537
                     /gene="SUGCT"
                     /gene_synonym="C7orf10; DERP13; GA3; ORF19"
                     /product="succinyl-CoA:glutarate-CoA transferase,
                     transcript variant X7"
                     /db_xref="GeneID:79783"
                     /db_xref="HGNC:HGNC:16001"
                     /db_xref="MIM:609187"
ORIGIN      
atctgagacgcacgcgatgctggcgacgctggcgagggtggcagctctgcgcagaacctgcctcttctccggccggggcggcgggagggggctgtggactggccgcccgcagtcagatatgaacaatataaagccattggaaggggtaaaaattctggatctaacaagagtcctggcgggaccttttgctactatgaatttaggagatcttggagcagaagttataaaagtggagagaccaggagctggtgatgatacacgaacttgggggccaccttttgttgggacagaaagtacatattatctcagtgttaaccgaaataaaaaaagtattgctgttaatatcaaggatccaaaaggggtgaaaatcatcaaagagcttgcagctgtttgtgatgtgtttgtggaaaactatgtccctggcaaactgtctgcaatgggcctgggatatgaagatatagacgagattgctcctcacatcatctattgttccatcacagggtatggtcagacaggtccaatttctcagcgagctggttatgatgctgttgcctcggctgtttctggtctgatgcacatcacagggcctgagaatggagatccagttcgcccaggagtagctatgactgatcttgccactggcctgtatgcatatggagctattatggctggattgatacaaaaatacaaaactgggaaaggactgttcattgattgtaacctgctgtcatcccaggtggcgtgtttgtctcacatagctgcaaattatcttattggtcaaaaggaagcaaaacgttggggtacagctcatggcagtatcgttccttaccaggcttttaaaaccaaggatggctatattgtagttggagcaggaaataaccagcagtttgccaccgtctgcaagatcttggatttgcctgagttgattgataattccaagtataaaactaaccaccttcgggtacacaatagaaaagagcttattaaaatattatctgaacggtttgaagaagaactgaccagcaagtggttatatctttttgaaggcagtggagtcccgtatggcccaatcaacaacatgaagaatgtatttgcagaacctcaggtccagtctgtggagtggctacataagggagacatcttgatgaagaagactttatataacaaaacaataaccataacggtattacacaatggcctcgttatggagatggagcatccaactgtggggaagatttccgtcccagatctcaggcacagtggcatccttcaccatgtggaagttgacactggcttctaccacacagtgtggttctggagagagtcaagatgaagtcctgttgatagaagaactgtgtttattctgaagctctcgctcccaccccagggaaagccgaaggaggagcttgacaagctaaaggtttccttttagacaaagtattggaagttatgaaatgtccttgttatagatgagagcaactgaccagatctgccacacacaggaatgcctcccattgctctccaggcatcagaagatgatccactgggctgcaaattatggaggaaaaatccattcatttatgaaggttttgaaatatccaacactaaagttgaagttcttgaagcctggccagtataaacaattttacataaagctctgtttacttctattcagaagcagtcaaaatgacccagttgttctgtggagcatggagctctggtgtctatcatccactggttggatttctttatggtcaggttataaagaggatcatcttagctacttcctgctataaaattttatcctcttttctcctatggaaggcaatactcaatggtccctgtagaatgtatcttattggtagcacacatcaaggctgtgtgtgtctgtgtgtgttctcaagatccccactgtcattaacagaagaggactatagatatgcttcctgttagaacacacaataaagctctttgattaaggctcacactaattgcatgtgaagtctgctacccattgaattcaggttaaaggtaaaactaataaagatgttacaggtgaacattggccttcctgaaattgcataaatgtaattgatgagaaaaaacaatgaaacaaagtaatgaatatgttattaatttcctggttcaagtttgaagtcaagaagagataaaaagttcatcagaattggtgttttatcaggtaaaactggattcatatttttttaattctaggagcaacaattcatccttggttatttctcagaattattccatattgtttggaagctcaaaaacttgagcccatctccatctgttccttcgtttagctttgaaaacctttctatgcttctagtatatgtggatcagcctgctttctcctccttcttcctaggactcttttgctgccttagtccttggctctgacaaccctttggtttagttgtcctgcctaactgaaagcatgagattaaaccaaggcaatgagaacttggtgttcccaacttaagtttgtgtggtcagttcatcagaactcaccatgctttcttcttaacagtacaggcttcttaattaggtatctgtccagctcatgaactgcaagaggtgaagacctttcccttgcatatttggaataaaaaacagcttgcctctggtgatttgggaccttggccccagtaactcagctgttctttattcctacagtctaccttcatgtgcgactttgagaatctcaagggttagagaatggagaacaacaattaaattgggactcttcgagtttcttttatttgatccttagtttgcattacatagaaattaacagcatgggccttggagtttaacaccctaaggtcagatctttactctgacccatattctgtatgaacttagaaaagtttctgatcctctctgtgtcagttttacctataggcataatatagctatttatctcacagaattgtcaggatgactgagtgacacaatacatgcaaaatgcttactacagaataaggccttgttaaatgttggctgctataattgttgtaaatagtgttaaattggccttctagaagttaagggtgggactttccaggatgtactttacctgttttaatgtatgaattttgtaacgtaaacatgcttaacttcccatgtgttttactataagtataagcagtggattgatttatccctatctcagtcccaaaacatcagtcaatcctggtctacctacttcagggcatatcccactgaactggctccccactgtgggagcaggatatgcaaccacagacagagtctccagtaaattcagtttccataagcttaaatcacagaaacactctggaggcaatgccaagtttcttccagaaagagaaatactatgatcatagctcacaaaatcaggctgaactttcacattctctcttgtatcactagtgaaaaaaaaatcttactgtcaaggaatctccaccctaggcaagatttatgttccactttcctgacatttggttcttttcctgggatcagactcattccaatatatttatgcttgaagagtccactggaaaactttccaagccagcaataggaaactgctacctggctgattctctcctcagctgctggcatagtggagaaaagacttcaggaaccttcagcagactgtctccctgtccagatttgtatcaacattaatgctttgctcatgattgaaaaacatgttcaggcttccagactcaaatatgtttcctttgctcataaccctctggtgagggaacaaatggttttggatccctggagagatgggatgtccctttatgactgagtttccctgaactcagtggggtgctgtgggctctctggatgccattatgatgaggctggagatgctccttgcttggctaaatcctcacatgttaatatttggcccgcctgttccgcagtgattgatattaagggatgagagtttttcctgaattttttcccgcatttttcaagcagaggtcacaatgacctgctgagaaggcaagaatggctatagcaatttagaagaaacatgacaatcacctcttgcttggtagaaacaggcaagggagtgatagccccaaaggaggagagagactggttattctaaagagtgcaatggagtcacaaagtatgaatgagcaggagagtagttggggatgagagatgtggagtaggacttatcgttactttacagtttgtggtttgttaatctgaactcttcttctctgccccaaagggaatctttcatctgtcatagtggttaagagcagagccttggtgtcagatgtacttgggtaagagctctgccacttagaagtatgccttggtcagcttgcctggcctctctaaaccttggtttcctcattattaaagataataattcctgttatatgcattaatgaaaaataaacatcagatcacctataatggtacctgccaaataattcaatgacactaaagagtggctagtgatagtagtggtagttggaatagtggccgaggttatggtattggtgttgaggatggtggtaacggcagtagaagcagaaaaggctgtaatacttgcaggctccagcgttttcaccgtatgattcaacggtcctccaagggcaccacagcagatgtactggcttggagagaaaccagagtttgttggcctcaccgctctactgcctcctcaaaagtatacttttcccaccacttcttccttcttttaatggagccagatttacaaatggaaaaaataaaacgggcctatatttctgacacctgcctcacctgtgatcctgagacttggcagcaaagatttcccaagggccatggcagaaactagtctataagtcttcctctttggggacccttgttccctttcctggatccccagccagacagcccaggtggtttttcatgccatcagactgacgttaaattcaacctcagttcttaaaggaaaaggtaccatttcctttcaccagtccctggagcccacctccatcctatgattggccttctcccagaatgactcatcaacccagagtttgtccttttgatgacccctgacgtcttcctgagatggggtgagacctgctgggaggaaaggcaatcattatttcatcccaagctgaggccacataaaacacttcccttctctaatgaatgggctccaaagggcaatctgacttgtcttggtatgaccctcctaggccaagggtggggatgagaatttaagctaatgttggtgttggaaacatttagatatcaatttctcaactttttctcattataacagatagttaatgctgttgtggatggacctttctttacctttcccccgacttttaagagactttacagaagcagaataggaaaccactctattaacagtgtgtggcctggaaagtgtcagtgtttcatataatgtggaggcctagtatatataaacatgagcctcaaggaatatggagagtcatgctttgaaatgaggcaaaatagtgcaatggctaaaacaatgcatgatagagtagaacagattgggtttgaattaagaatgtggacatgccactttattttctaggcttcattttcctcatgggtatactggggctattgatggtaccctatctcgtaggtactatgttagataagacataaaatgcacagcatggtgcctgatgtaccatggtaggatgtggcaggggccactagcgggaaataagcaccatcacttggagctccaagaagacaacactaagctactgtggggatgaacacttagattcagggtattcatgagttgacattcagattgggacttgaaggagagtgtggcttccacagtggctaaataagtattacaggtagagaatgaaaacagagctgtgaaaggtaaattcatcaagcaatgaattgtgtgtggatagcaagatgcatgtgtgtgggtagaatagtgaatgaagaaataagctgggccaaaatattggatggcttgactaatacactaagaagttcttccagaatgcgatgcctccatagtggtcattctcctaggcctgctaactagccaactcccagaattattaactccaacaggcaagataatttggagatacccatgttggtatgcagtaagcatcccagcatatgctttaggattatttctacccctgtaattcagacctactgacaggtccgaactattggaaggacaggcccagaaaagtctatttatatgagaaatcagggtactgccagggaaaataaccacttcaggaacttgactcttggtcaaacatgtagcttgagagagtaggaacaattataaatccatgggatctcctacttccgtttcccttggacctatacctgagtccaatattagataaaggtcctgtacaccagaaatggcagggagtcctaagcccatggaatagaacctttgaggacctcaaggtggaaaagaggaccagtataaccagtggctggaagagtggcatgtagtgaagttgaagattgaagcagaggccagatgataaagaacattctaagtcctgaaggatagtctgaatttattaatatttctaaataaaatgggaagttaccaaggggaatttaagcagctgagtgatatgacatacttatgagtcagaaagaccatacatatttggagactgtgttgggtaggaaaaggtctggaagctggaaaccagttaggaaactactgtagtagtaagagcaagaggttgtgatgaccttcattgctacaagggtagtggaaggagtcatggagacaagtatagattcaaaatgtctttttaacatagaatcacagagctcaataatggattagaaaagtagtgaagacagagaggttggagtcaagaaagtctcctaagtttctggattcagcaaccaggccaacagtggtagtattgactgagacagaatacacaggggtgagaaggtgctttggctggaagacacaagagttctgattttgagaagttcaaataggtccttaggtaggcatatgtttatccaagacctttcaatgccctgggagttgtctggactagagagacaaaggtgggagggctgagcttcctgaaagagaggaaaaagacagggctctggaactaacctccaagcaactccaaaattttgtgtttgggaggagaaggcagagccagtaaagacactgaaaagaagtgcccaataaatttgaatgaaaagcaggggaatgtggtaccggaaagtgggggttggagagtgctttcaaacaagggagggctcagcagggtcaggtgccactaaagggctcactatggcaggtgtggcactaagcattctacatgcagcatcttattttatctctgaagtggcagagctggggttgaaaacaaggtacatctgactccaaagccaatgcattttctactaccctatgctccataggcatccatgccctcattttgcagataaaatattgaatgtcagagaataaagtggctacacagaccgagaggaactcatgttcgactgaaacctggggcatctcactcctaaatctatgtcacttctcctacagcaggcttcctctcctactctgcttccaacatggacttggaaaactctgggaatatatgcaaatgcttctccatgaagtagaaagaaaggtactttttctaccacaaaaggtagagatagggaggccgaggcagaagaatcacttgaacccgggaagcgaaagttgcagtgagccgagatcatgccactgcactccagtgtggcgacagagtgagactccatccaaaaaaaaaaaaaagaagaaaggtagaggtagagataaacccaagatcaggttttccagcagtgtgtttgaaaaattaaaataagcttgatttgcataggaagcaaaaattaatgacattctaagccttgtgctttaaggcacattcataggtttaaaaaaaataaccatgtcacataataaggcaaggtgcactttgggtgtggtaaactggaacacccaagcagggactacaggcatgggttgggtgcacctgcacttgggaggatttatggcagaccacagataggtactgctcactgcatcagtcagggccaaaggattacaggtggaagggaggtgtcaagtaggaagtctgagaagagcccaggtcacctactcccgagtatgcattggaaggggactcagatgcacctgggtgtggcagtgtccacttctgtttctggaaccagagccatggctgctgctcagctaggctggctctgctgctctcctcccttagctgtcagttaggctgagacaaaaagcctgtggcctgatactgctgcatggattgtgttttctttgactgattttcttttggcacaaaagtggcaagaaaatgaaaatgcgccggagcttgactgtgatgaatggggcaggagggtggtaggaagaaggctggtccaggagttaagctgtgccttgaagtacatcgatgggctgggcaggcagtggtggatcacagctggtaaaagcgtggaccctggtgggtaggccagccagctggctgtcatggctctcaagggacatctggaaagtacgggggatcagtctgtggcttttagctggacttggtcttgaaacacatggtctgaagtgttccctgggaggactgctagtggcaatccttgagggttatgtgttctgtggatccaccttgctgggaggagagagtgtctcagagtactgttaactttggcatgggctttgagacaggatcttggaaaggttatgccttatcccaagcaccgaaatgccatcaaaagtagttcccaggggcctttttaagggcctgatcatgagccttagctgtcttcagaatcagaaacagaacacatgctcagacccccataattcactaccttgagggcttgagagtagattcttatgccccaggctgagatctctttctgtggaatcccatgtggacacataacaaattatctcatcaccaatctcttgcctaagaaactcccttcaaacttcctttgacttattaatataggtcaagtagtttattacctactgacaacagttctcacggttctattccactggaccttttacaagcaaaatcccaggaaaagactatccctgttaccactttcctgagttcaaagtctaagttcaaagactaagtctcatgcactatataaaatagtcccacaactcagattctacccttttacccccttgttttcaacgtgatacctgacaaccatgttatttgggtatttgtgtttatttctgcctttgtcctgtagaatgcaagctccatgaggtcagtcatattgcatcgttcacttagcagtgatagcatatctgacatatagtagttgttcaatgagcactgattcaatcattgaatgaataaaagttctgtgtgggttgccatatggggcataatgaggagacaggtgagcaactgagaggtaagccta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]