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Previous release (v1)
2024-05-03 18:34:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_038205 219 bp RNA linear PRI 20-JUL-2023
DEFINITION Homo sapiens CFAP418 antisense RNA 1 (CFAP418-AS1), transcript
variant 5, long non-coding RNA.
ACCESSION NR_038205
VERSION NR_038205.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 219)
AUTHORS Mortlock DP, Fang ZM, Chandler KJ, Hou Y, Bickford LR, de Bock CE,
Eapen V and Clarke RA.
TITLE Transcriptional Interference Regulates the Evolutionary Development
of Speech
JOURNAL Genes (Basel) 13 (7), 1195 (2022)
PUBMED 35885978
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 219)
AUTHORS Fang Z, Zhao Z, Eapen V and Clarke RA.
TITLE siRNA Mediate RNA Interference Concordant with Early On-Target
Transient Transcriptional Interference
JOURNAL Genes (Basel) 12 (8), 1290 (2021)
PUBMED 34440463
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 219)
AUTHORS Wade TD, Gordon S, Medland S, Bulik CM, Heath AC, Montgomery GW and
Martin NG.
TITLE Genetic variants associated with disordered eating
JOURNAL Int J Eat Disord 46 (6), 594-608 (2013)
PUBMED 23568457
REFERENCE 4 (bases 1 to 219)
AUTHORS Fernandez-Rozadilla C, Cazier JB, Tomlinson IP, Carvajal-Carmona
LG, Palles C, Lamas MJ, Baiget M, Lopez-Fernandez LA,
Brea-Fernandez A, Abuli A, Bujanda L, Clofent J, Gonzalez D, Xicola
R, Andreu M, Bessa X, Jover R, Llor X, Moreno V, Castells A,
Carracedo A, Castellvi-Bel S and Ruiz-Ponte C.
CONSRTM EPICOLON Consortium
TITLE A colorectal cancer genome-wide association study in a Spanish
cohort identifies two variants associated with colorectal cancer
risk at 1p33 and 8p12
JOURNAL BMC Genomics 14, 55 (2013)
PUBMED 23350875
REMARK Publication Status: Online-Only
REFERENCE 5 (bases 1 to 219)
AUTHORS Comuzzie AG, Cole SA, Laston SL, Voruganti VS, Haack K, Gibbs RA
and Butte NF.
TITLE Novel genetic loci identified for the pathophysiology of childhood
obesity in the Hispanic population
JOURNAL PLoS One 7 (12), e51954 (2012)
PUBMED 23251661
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
GU295158.1.
Transcript Variant: This variant (5) lacks three internal exons and
uses an alternate splice site, compared to variant 1.
##Evidence-Data-START##
Transcript exon combination :: GU295158.1 [ECO:0000332]
RNAseq introns :: partial sample support SAMEA2154665,
SAMEA2159080 [ECO:0000350]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-219 GU295158.1 1-219
FEATURES Location/Qualifiers
source 1..219
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="8"
/map="8q22.1"
gene 1..219
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/note="CFAP418 antisense RNA 1"
/db_xref="GeneID:100616530"
/db_xref="HGNC:HGNC:50444"
ncRNA 1..219
/ncRNA_class="lncRNA"
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/product="CFAP418 antisense RNA 1, transcript variant 5"
/db_xref="GeneID:100616530"
/db_xref="HGNC:HGNC:50444"
exon 1..55
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/inference="alignment:Splign:2.1.0"
variation 2..22
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="gtgaagaggtgccagaatccg"
/replace="gtgaagaggtgccagaatccgtgaagaggtgccagaatccg"
/db_xref="dbSNP:1812074123"
variation 6
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1157981322"
variation 7
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:906266089"
variation 9
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1812074623"
variation 10
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:62524394"
variation 11
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1042741646"
variation 13
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1812075281"
variation 15
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace=""
/replace="a"
/db_xref="dbSNP:1812075559"
variation 15
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1466800792"
variation 16
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1812075675"
variation 18
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1812075781"
variation 19
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:900419859"
variation 20
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1400431335"
variation 22
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1171433303"
variation 23
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:2132170291"
variation 24
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1477029064"
variation 25
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1379268881"
variation 26
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1586041877"
variation 27
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:996463123"
variation 29
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1236075585"
variation 30
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1812076800"
variation 31
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1458356551"
variation 33
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1262638784"
variation 34
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1812077183"
variation 35
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1812077282"
variation 36
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:564636740"
variation 37
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1347825847"
variation 38
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1051618912"
variation 39
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1375151514"
variation 40
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:890264298"
variation 41
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1004656367"
variation 42
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1014994483"
variation 43
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:963425651"
variation 44..48
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="ctgcc"
/replace="ctgcctgcc"
/db_xref="dbSNP:1404343415"
variation 44
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace=""
/replace="c"
/db_xref="dbSNP:1173106677"
variation 47
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1021869263"
variation 48
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1378292139"
variation 49
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:994797826"
variation 50
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1024020863"
variation 51
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1812078894"
variation 54
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1812079064"
variation 55
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:968747490"
exon 56..94
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/inference="alignment:Splign:2.1.0"
variation 60
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:897886145"
variation 64
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1820719936"
variation 67
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1242039925"
variation 68
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:924937148"
variation 71..73
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="gg"
/replace="ggg"
/db_xref="dbSNP:1198179776"
variation 71
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1820720168"
variation 75
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1484046838"
variation 82
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:749836506"
variation 85
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1820720528"
variation 86
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:930639502"
variation 88
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1049053477"
variation 89
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:985213286"
variation 90
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:912294249"
variation 91
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace=""
/replace="t"
/db_xref="dbSNP:1240850388"
variation 91
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1381891040"
variation 94
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:944239745"
exon 95..219
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/inference="alignment:Splign:2.1.0"
variation 95
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1815024619"
variation 96..98
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="t"
/replace="ttt"
/db_xref="dbSNP:1815024688"
variation 103
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1263343361"
variation 105
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace=""
/replace="t"
/db_xref="dbSNP:1218469059"
variation 106
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1815024892"
variation 108
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1815024959"
variation 109..113
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="aca"
/replace="acaca"
/db_xref="dbSNP:1815025031"
variation 110
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1318018129"
variation 115
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:2130884677"
variation 116..153
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="ctgaagctctcctggca"
/replace="ctgaagctctcctggcatactctgaagctctcctggca"
/replace="ctgaagctctcctggcatactctgaagctctcctggcatactctgaag
ctctcctggca"
/db_xref="dbSNP:997294015"
variation 116
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="cc"
/db_xref="dbSNP:1815025166"
variation 117
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1563739280"
variation 121
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1446366623"
variation 122
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1027512549"
variation 125
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:2130884690"
variation 126
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1815025515"
variation 131
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1358601613"
variation 142
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1815025867"
variation 145
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:79951318"
variation 149
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1815026017"
variation 150
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:544466088"
variation 151
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1456437969"
variation 152
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:77667067"
variation 158
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:970522064"
variation 161
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:545624382"
variation 164
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1349179330"
variation 166
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1321539185"
variation 169
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:999369197"
variation 170
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1815026729"
variation 173
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1815026795"
variation 174
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1385323319"
variation 175
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:907868196"
variation 177
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1030718981"
variation 181
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1815027154"
variation 188
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1815027231"
variation 191
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:966444146"
variation 192
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1815027367"
variation 194
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1188636602"
variation 203
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:533475518"
variation 205
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1586800155"
variation 211
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1815027678"
variation 212
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1815027740"
variation 217..219
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="ggg"
/replace="gggg"
/db_xref="dbSNP:1815027869"
variation 217
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:989662603"
variation 218
/gene="CFAP418-AS1"
/gene_synonym="C8orf37-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1815027927"
ORIGIN
agtgaagaggtgccagaatccgcgaagagggtcgacgaatgcgctgccgcggaggcaacaatggccatgagggattcaaggattatgcggtaaggtttaagacctgtgacacagactgaagctctcctggcatactctgaagctctcctggcaccctcccctttatgcttcacaggtgtttctcctaataaatttcttgtatgtctcatcccatctggg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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