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Previous release (v1)
2024-05-01 20:34:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001643 474 bp mRNA linear PRI 04-DEC-2023
DEFINITION Homo sapiens apolipoprotein A2 (APOA2), mRNA.
ACCESSION NM_001643
VERSION NM_001643.2
KEYWORDS RefSeq; MANE Select.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 474)
AUTHORS Futagami S, Agawa S, Nakamura K, Watanabe Y, Habiro M, Kawawa R,
Yamawaki H, Tsushima R, Kirita K, Akimoto T, Ueki N, Tomohide T,
Itokawa N, Suzuki N, Naito Y, Takeuchi K, Kashiro A, Ohta R,
Mizutani S, Taniai N, Yoshida H, Iwakiri K and Honda K.
TITLE Apolipoprotein A2 isoforms associated with exocrine pancreatic
insufficiency in early chronic pancreatitis
JOURNAL J Gastroenterol Hepatol 38 (11), 1949-1957 (2023)
PUBMED 37501507
REMARK GeneRIF: Apolipoprotein A2 isoforms associated with exocrine
pancreatic insufficiency in early chronic pancreatitis.
REFERENCE 2 (bases 1 to 474)
AUTHORS Wilkins JT and Rohatgi A.
TITLE Resolution of apolipoprotein A1 and A2 proteoforms: their
cardiometabolic correlates and implications for future research
JOURNAL Curr Opin Lipidol 33 (4), 264-269 (2022)
PUBMED 36082946
REMARK GeneRIF: Resolution of apolipoprotein A1 and A2 proteoforms: their
cardiometabolic correlates and implications for future research.
Review article
REFERENCE 3 (bases 1 to 474)
AUTHORS Abaj F, Esmaeily Z, Naeini Z, Rafiee M and Koohdani F.
TITLE Dietary acid load modifies the effects of ApoA2-265 T > C
polymorphism on lipid profile and serum leptin and ghrelin levels
among type 2 diabetic patients
JOURNAL BMC Endocr Disord 22 (1), 190 (2022)
PUBMED 35883173
REMARK GeneRIF: Dietary acid load modifies the effects of ApoA2-265 T > C
polymorphism on lipid profile and serum leptin and ghrelin levels
among type 2 diabetic patients.
Publication Status: Online-Only
REFERENCE 4 (bases 1 to 474)
AUTHORS Jafari Azad B, Yaseri M, Daneshzad E and Koohdani F.
TITLE Interaction between Apo A-II -265T > C polymorphism and dietary
total antioxidant capacity on some oxidative stress and
inflammatory markers in patients with type 2 diabetes mellitus
JOURNAL Br J Nutr 128 (1), 13-29 (2022)
PUBMED 34372957
REMARK GeneRIF: Interaction between Apo A-II -265T > C polymorphism and
dietary total antioxidant capacity on some oxidative stress and
inflammatory markers in patients with type 2 diabetes mellitus.
REFERENCE 5 (bases 1 to 474)
AUTHORS Wilkins JT, Seckler HS, Rink J, Compton PD, Fornelli L, Thaxton CS,
LeDuc R, Jacobs D, Doubleday PF, Sniderman A, Lloyd-Jones DM and
Kelleher NL.
TITLE Spectrum of Apolipoprotein AI and Apolipoprotein AII Proteoforms
and Their Associations With Indices of Cardiometabolic Health: The
CARDIA Study
JOURNAL J Am Heart Assoc 10 (17), e019890 (2021)
PUBMED 34472376
REMARK GeneRIF: Spectrum of Apolipoprotein AI and Apolipoprotein AII
Proteoforms and Their Associations With Indices of Cardiometabolic
Health: The CARDIA Study.
REFERENCE 6 (bases 1 to 474)
AUTHORS Bekaert ED, Alaupovic P, Knight-Gibson C, Norum RA, Laux MJ and
Ayrault-Jarrier M.
TITLE Isolation and partial characterization of lipoprotein A-II
(LP-A-II) particles of human plasma
JOURNAL Biochim Biophys Acta 1126 (1), 105-113 (1992)
PUBMED 1606170
REMARK Erratum:[Biochim Biophys Acta 1992 Jul 9;1127(1):103]
REFERENCE 7 (bases 1 to 474)
AUTHORS Vollmer E, Brust J, Roessner A, Bosse A, Burwikel F, Kaesberg B,
Harrach B, Robenek H and Bocker W.
TITLE Distribution patterns of apolipoproteins A1, A2, and B in the wall
of atherosclerotic vessels
JOURNAL Virchows Arch A Pathol Anat Histopathol 419 (2), 79-88 (1991)
PUBMED 1908160
REFERENCE 8 (bases 1 to 474)
AUTHORS Deeb SS, Takata K, Peng RL, Kajiyama G and Albers JJ.
TITLE A splice-junction mutation responsible for familial apolipoprotein
A-II deficiency
JOURNAL Am J Hum Genet 46 (4), 822-827 (1990)
PUBMED 2107739
REFERENCE 9 (bases 1 to 474)
AUTHORS Ritter,M.C. and Scanu,A.M.
TITLE Apolipoprotein A-II and structure of human serum high density
lipoproteins. An approach by reassembly techniques
JOURNAL J Biol Chem 254 (7), 2517-2525 (1979)
PUBMED 218942
REFERENCE 10 (bases 1 to 474)
AUTHORS Weisgraber,K.H. and Mahley,R.W.
TITLE Apoprotein (E--A-II) complex of human plasma lipoproteins. I.
Characterization of this mixed disulfide and its identification in
a high density lipoprotein subfraction
JOURNAL J Biol Chem 253 (17), 6281-6288 (1978)
PUBMED 210174
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AL590714.27.
This sequence is a reference standard in the RefSeqGene project.
On Nov 26, 2018 this sequence version replaced NM_001643.1.
Summary: This gene encodes apolipoprotein (apo-) A-II, which is the
second most abundant protein of the high density lipoprotein
particles. The protein is found in plasma as a monomer, homodimer,
or heterodimer with apolipoprotein D. Defects in this gene may
result in apolipoprotein A-II deficiency or hypercholesterolemia.
[provided by RefSeq, Jul 2008].
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AV681656.1, AV682018.1 [ECO:0000332]
##Evidence-Data-END##
##RefSeq-Attributes-START##
MANE Ensembl match :: ENST00000367990.7/ ENSP00000356969.3
RefSeq Select criteria :: based on single protein-coding transcript
##RefSeq-Attributes-END##
COMPLETENESS: full length.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-34 AL590714.27 78775-78808 c
35-110 AL590714.27 78530-78605 c
111-243 AL590714.27 78098-78230 c
244-474 AL590714.27 77472-77702 c
FEATURES Location/Qualifiers
source 1..474
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="1"
/map="1q23.3"
gene 1..474
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/note="apolipoprotein A2"
/db_xref="GeneID:336"
/db_xref="HGNC:HGNC:601"
/db_xref="MIM:107670"
exon 1..34
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/inference="alignment:Splign:2.1.0"
variation 2
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1475861989"
variation 3
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:963916250"
variation 12
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:3813625"
variation 17
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1666212411"
variation 24
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="t"
/db_xref="dbSNP:1435440056"
variation 25
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1019515044"
variation 26
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:935837640"
variation 30
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:2102068666"
misc_feature 32..34
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/note="upstream in-frame stop codon"
variation 33
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1178103574"
exon 35..110
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/inference="alignment:Splign:2.1.0"
variation 36
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1227034667"
variation 37
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:779237488"
variation 38
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:201433891"
variation 39
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:756693875"
variation 41
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:2102068536"
variation 43..46
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="ccc"
/replace="cccc"
/db_xref="dbSNP:1666209011"
variation 43
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:753305347"
variation 44
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:767749589"
variation 45
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1490899648"
variation 49
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:1666208968"
variation 54
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1666208932"
variation 57
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:113287633"
variation 58
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:750002166"
CDS 59..361
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/note="apolipoprotein A-II"
/codon_start=1
/product="apolipoprotein A-II preproprotein"
/protein_id="NP_001634.1"
/db_xref="CCDS:CCDS1226.1"
/db_xref="GeneID:336"
/db_xref="HGNC:HGNC:601"
/db_xref="MIM:107670"
/translation="
MKLLAATVLLLTICSLEGALVRRQAKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ"
misc_feature 59..352
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/note="Apolipoprotein A-II (ApoA-II); Region: ApoA-II;
pfam04711"
/db_xref="CDD:428079"
sig_peptide 59..112
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/inference="COORDINATES: ab initio prediction:SignalP:4.0"
proprotein 113..358
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/product="apolipoprotein A-II proprotein"
mat_peptide 128..358
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/product="apolipoprotein A-II"
variation 67
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:764889371"
variation 68
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1369485859"
variation 70
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:761252493"
variation 71
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:368696854"
variation 72
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:763656404"
variation 77
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:367919422"
variation 78
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:760520457"
variation 82
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:1666208252"
variation 83
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1431737804"
variation 84
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:775550034"
variation 85
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1558092315"
variation 86
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:771735928"
variation 88
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:146843647"
variation 89
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:745709083"
variation 91
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1427517558"
variation 93
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666207903"
variation 97
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666207867"
variation 98
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:11549092"
variation 103
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1200649670"
variation 104
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:202223831"
variation 107
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1267411752"
variation 110
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:771293264"
exon 111..243
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/inference="alignment:Splign:2.1.0"
variation 111
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:746257249"
variation 114
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1803090"
variation 115
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:1474912775"
variation 118..119
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="gg"
/replace="ggg"
/db_xref="dbSNP:1490446123"
variation 118
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:777234247"
variation 119
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:755798056"
variation 122
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1268122983"
variation 123
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:747822892"
variation 124
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:903132915"
variation 125
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1307073652"
variation 126
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1666196095"
variation 128
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1489882107"
variation 131
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1666196031"
variation 136
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:780741920"
variation 137
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:754574059"
variation 139
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:557256114"
variation 143
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1268614903"
variation 144
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1225756979"
variation 149
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1666195787"
variation 151
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1346496201"
variation 152
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1283206658"
variation 153
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:766440167"
variation 157
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:758208212"
variation 168
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="t"
/db_xref="dbSNP:1803089"
variation 169
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666195511"
variation 176..180
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="accgt"
/replace="accgtaccgt"
/db_xref="dbSNP:751969683"
variation 177
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1210809387"
variation 178
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:536923098"
variation 179
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:142522492"
variation 181
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1558091983"
variation 189
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1393943609"
variation 190
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:778021672"
variation 192
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:1666195026"
variation 193
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="cc"
/db_xref="dbSNP:1666194951"
variation 196
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:1009168604"
variation 198
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1666194865"
variation 204
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:560203454"
variation 211
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:1571635234"
variation 212
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1178085054"
variation 214
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666194710"
variation 215..225
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="aagagcccaga"
/replace="aagagcccagaagagcccaga"
/db_xref="dbSNP:766908552"
variation 215
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="t"
/db_xref="dbSNP:1666194673"
variation 219
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1204244165"
variation 220
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666194539"
variation 226
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1558091966"
variation 230
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:373056577"
variation 231
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:764207506"
variation 233
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:760778588"
variation 234
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:201717769"
variation 235
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:370208442"
variation 236
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:146224429"
variation 238
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1666194143"
variation 242..243
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1230508884"
variation 243
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:774776533"
exon 244..474
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/inference="alignment:Splign:2.1.0"
variation 244
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:371681039"
variation 245
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:774770928"
variation 252
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:771286488"
variation 253
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="t"
/db_xref="dbSNP:749636227"
variation 255..258
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="aaa"
/replace="aaaa"
/db_xref="dbSNP:1666186791"
variation 260
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1571634836"
variation 262..264
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1286481282"
variation 265
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1447797616"
variation 268
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:776287664"
variation 270
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1666186448"
variation 272
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666186399"
variation 274
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:768425737"
variation 276
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1803091"
variation 280
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:2102067888"
variation 281
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1158304839"
variation 283
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1666186123"
variation 286
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1398937616"
variation 287
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1666185995"
variation 288
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:779695910"
variation 290
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="t"
/db_xref="dbSNP:1165599781"
variation 294
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1445297122"
variation 297
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:1384875024"
variation 299
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:12824"
variation 300
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:200538010"
variation 301
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:138452270"
variation 304
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="t"
/db_xref="dbSNP:764978622"
variation 305
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:5088"
variation 306
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:778751126"
variation 307
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1364062089"
variation 308
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1666185142"
variation 310
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:757032616"
variation 313
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1407171752"
variation 314
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666184977"
variation 315
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:777908160"
variation 316
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace=""
/replace="c"
/db_xref="dbSNP:1335657512"
variation 319..320
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace=""
/replace="catttattgt"
/db_xref="dbSNP:1666184780"
variation 319
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:756325696"
variation 320
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace=""
/replace="a"
/db_xref="dbSNP:1374762762"
variation 323
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="t"
/db_xref="dbSNP:1281341122"
variation 328
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:752976925"
variation 329
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:138954773"
variation 335
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1215900467"
variation 337
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:767563719"
variation 338
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:753545559"
variation 339
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1361924626"
variation 342
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1288140955"
variation 344
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:759575953"
variation 346
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:6413454"
variation 347
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:766810017"
variation 350
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:763308512"
variation 351..352
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="cc"
/replace="tt"
/db_xref="dbSNP:865834629"
variation 351
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1666183842"
variation 354
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1195424854"
variation 357
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1234048540"
variation 358
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1571634706"
variation 360
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace=""
/replace="g"
/db_xref="dbSNP:36027516"
variation 363
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:773443521"
variation 367
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1006991518"
variation 368
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:770336880"
variation 370
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:937394706"
variation 371
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1483540728"
variation 372
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:760378915"
variation 373
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:775317995"
variation 374
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:771665149"
variation 377
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:2102067804"
variation 378
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="t"
/db_xref="dbSNP:1382986711"
variation 379
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:745396210"
variation 385
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1571634665"
variation 387
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1029859927"
variation 388
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1490046614"
variation 389
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1571634650"
variation 393
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1263226942"
variation 402
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:1205998906"
variation 404
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1571634640"
variation 406
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/db_xref="dbSNP:1571634633"
variation 408
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:760110117"
variation 410
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:368862336"
variation 411
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666182319"
variation 417
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:749315211"
variation 419..420
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace=""
/replace="gggtgccagtggag"
/db_xref="dbSNP:1345575731"
variation 419
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="g"
/replace="t"
/db_xref="dbSNP:774893741"
variation 421
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:777531516"
variation 422
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace=""
/replace="t"
/db_xref="dbSNP:1274208727"
variation 423
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:771421275"
variation 424
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1666181947"
variation 426
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:967793822"
variation 427
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666181847"
variation 429
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1283858844"
variation 433
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666181763"
variation 434
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1404201629"
variation 435
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1385256388"
variation 437
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1571634592"
variation 438
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1388475952"
variation 440
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:867083217"
variation 443
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:755953730"
variation 445
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="g"
/db_xref="dbSNP:1666181442"
variation 447
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:2102067764"
variation 448
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:763419450"
variation 449
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1355357409"
variation 452
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1169957473"
variation 453
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:781414435"
regulatory 454..459
/regulatory_class="polyA_signal_sequence"
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/note="hexamer: AATAAA"
variation 454
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:1666181105"
variation 462
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1431828282"
variation 467
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1200582978"
variation 473
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="c"
/replace="t"
/db_xref="dbSNP:1666180936"
polyA_site 474
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/note="major polyA site"
variation 474
/gene="APOA2"
/gene_synonym="Apo-AII; ApoA-II; apoAII"
/replace="a"
/replace="g"
/db_xref="dbSNP:755025275"
ORIGIN
aggcacagacaccaaggacagagacgctggctaggccgccctccccactgttaccaacatgaagctgctcgcagcaactgtgctactcctcaccatctgcagccttgaaggagctttggttcggagacaggcaaaggagccatgtgtggagagcctggtttctcagtacttccagaccgtgactgactatggcaaggacctgatggagaaggtcaagagcccagagcttcaggccgaggccaagtcttactttgaaaagtcaaaggagcagctgacacccctgatcaagaaggctggaacggaactggttaacttcttgagctatttcgtggaacttggaacacagcctgccacccagtgaagtgtccagaccattgtcttccaaccccagctggcctctagaacacccactggccagtcctagagctcctgtccctacccactctttgctacaataaatgctgaatgaatcca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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