GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-04-25 22:53:21, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Gallus gallus uncharacterized LOC121109953 (LOC121109953), ncRNA. (1209 bp)
by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="CGNC:89819" /db_xref="GeneID:121109953" ncRNA 1..1209 /ncRNA_class="lncRNA" /gene="LOC121109953" /product="uncharacterized LOC121109953" /db_xref="GeneID:121109953" /db_xref="CGNC:89819" ORIGIN // aggtcataatgacctccattcctgttggacatcctgctatttgtgggttagacttggacttcggccacatttaatagcccctcctggatcaccccccttagacaaggtcagcctgagcctgctttgggcataccctggggaagatatggattcctgcaatgttttggactgtgagtacatcaggatgaagagtctgtgttggtgtttgtggtgtacaggcttctgattcaggtattcctgctgtgttacacaatagctgtctcatgcagcaagcactagagaactacagcagatgaagtgcttggtgacatg...
position 1
XR_005857750.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus uncharacterized LOC121109953 (LOC121109953), ncRNA. (1211 bp)
by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="CGNC:89819" /db_xref="GeneID:121109953" ncRNA 1..1211 /ncRNA_class="lncRNA" /gene="LOC121109953" /product="uncharacterized LOC121109953" /db_xref="GeneID:121109953" /db_xref="CGNC:89819" ORIGIN // aggtcataatgacctccattcctgttggacatcctgctatttgtgggttagacttggacttcggccacatttaatagcctctcctggatcactccccccttagacaaggtcagcctgagcctgctttgggcataccctggggaagatatggattcctgcaatgttttggactgtgagtacatcaggatgaagagtctgtgttggtgtttgtggtgtacaggcttctgattcaggtattcctgctgtgttacacaatagctgtctcatgcagcaagcactagagaactacagcagatgaagtgcttggtgaca...
position 1
XR_005847094.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X2, mRNA. (2466 bp)
agctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaaacagactaaaactggcaaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa
position 2229
XM_040686066.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X1, mRNA. (2469 bp)
agctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaaacagactaaaactggcaaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa
position 2232
XM_040686065.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X6, mRNA. (2517 bp)
agctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaaacagactaaaactggcaaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa
position 2280
XM_046929089.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X7, mRNA. (2520 bp)
agctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaaacagactaaaactggcaaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa
position 2283
XM_046929090.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X5, mRNA. (2551 bp)
agctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaaacagactaaaactggcaaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa
position 2314
XM_040686068.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X8, mRNA. (2554 bp)
agctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaaacagactaaaactggcaaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa
position 2317
XM_046929091.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X2, mRNA. (2874 bp)
gagctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaacagactaaaactggcgaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa
position 2637
XM_040649392.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X1, mRNA. (2877 bp)
gagctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaacagactaaaactggcgaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa
position 2640
XM_040649391.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript variant X4, misc_RNA. (6270 bp)
gagctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaacagactaaaactggcgaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaagccaaagaagcagtggtggcgaacgaggcgttcaaggtgcacgtttaggaggagggagaggagactgctgctttccctgctgctgtctgaggggacacttctgctcctgttgcaggtaaca...
position 2640
XR_005840547.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus uncharacterized LOC107054642 (LOC107054642), transcript variant X3, ncRNA. (8202 bp)
ctgtccatgactctcttgcatagacagaggagatgcaatctggcttcaacactgctgcacagtgtgcagagctctctggagctcagcagcatcagggagttgctgcaggttgaggagaaaggactgactacccaaacatcaacaggaggaaactatggtgccaacttattctagggcttcccaaggatgaggtagaaatctgtgacgccatctgtgcaagccctggcaaatgcattccatcctaagcatgctggctctgcacaggttcacttgtctcactggacttccttagaaggtcataatgacctacaggtctaggtatcagcaactgaaagcactgaaatttgtgtttttctccagttaatattacttaattgtgcagatacgtgtgtatttgtaatttagcagggatcttcagactgaaccagccagagagtagaagacatatctggaaatacccacggtctgagctggtgcctggggagaagtgggcagtttatcactggtgaccttgacacttgctcagatggagaggaagaggagctgttggggtgctgctacaggcaaagctctctgcattggtctgtgtggccagcagta...
position 7501
XR_005854039.2 - Gallus gallus (chicken) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/gg/iub%3aaggtcannrtgacct
lang : en | div : | spe : gg | query_string : iub:aggtcannrtgacct | format : html | download : 

0.000 | 0.000 | search_start;
0.105 | 0.105 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct))?source=Gallus gallus (chicken)?to=0&format=json
0.267 | 0.162 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct))?source=Gallus gallus (chicken)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.277 | 0.010 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]