2024-05-03 06:46:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_003075334 3345 bp RNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, misc_RNA. ACCESSION XR_003075334 VERSION XR_003075334.3 DBLINK BioProject: PRJNA698609 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 1, 2022 this sequence version replaced XR_003075334.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3345 /organism="Gallus gallus" /mol_type="transcribed RNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="5" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..3345 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 98 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns" /db_xref="CGNC:8113" /db_xref="GeneID:423404" misc_RNA 1..3345 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X3" /experiment="COORDINATES: cap analysis [ECO:0007248]" /db_xref="GeneID:423404" /db_xref="CGNC:8113" ORIGIN
gccgctccgcggggcacttcgggcagctactactggcgacgggctgggacatggccttgttcccggctttcgccggtgccccagagcccggggaggccccagccggcagcagcgagggctccaggaaagaattggactggcttagtaacccaagcttctctacggaagatgccctgttactgcatcagcgcactacagaagctgcaaatctcacccctgaaaaatcacctctaataagtaggagtacttcaagatcagacttatcaggggaaagtgatacagatgagagtctgaaaaagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaagggggactccagtagcagcgaatcagacctggacacaaagtgcatcaaggacaaagctgcagcaaatctagatgataaaacatcaaatcttaccagcaaccgctctgtttggctggatgatgtccaggctttcacaacagaaactttcagaatagacaaaaaatcagaccctgcaaactgggcctacaaatccctgtatcgaggggatattgcaagatacaaaaggagaggagagtcctgtcttggcctagatacaaagaaacagtgtatagcttgggacagtccagcatcagaaaagaagcaattgcagaggcgacctgagcgttacttctcgaagagcaatgtgaagaccctgaactcagatgggattcctgtttgcaataaaagttctccatctgacccagcagcatttataccagttctccacgtggaaaccagtgatccttctgacacaacagaggtaaatcctcttgggatttatgatccatcaactacagagtggctacaaggaaaagggtacaaaggtgaagaacatgagcctgtaaatacgcagcaggcgtttcaagagcctgggataaatgttaaccccattctaatgacgaaagtggaagaacataataagaaagtcagagaaaacccaagagatattcaggcttggatgaatttcgtttcatttcaggatgaattaatgagaggacctagcccttatgccagtatgggagagcaggaagtaagaagaaaatcactgaagttaatcttggagaagaaactagctattttagagagggcaattgaaagcaatccaagtaacgttgatctgaaactcgccaggctgagtgtttgcacggaattctgggaatcaccagctgtgatcaaagaatggcagaagctaattttcatacatcccaacaatccagagctgtggaagaaatatctcctgttctgccaaagtcaattcagtaccttttctgtttcaaaaattaatagcctctatggaaaatgtttgactaccttggcagctgtacaggatggcagcatggtatcacatcctccgctgcctggcacagaagaagctatgcttgccatatttattcagcagtgccactttctgagacaagctggccattctgagaaggcggtgtcattgtttcaggctctgattgacttcaccttcttcaaacctgacagcgtaaaagatctgccaacaaagggacaggtggaattctttgaacccttttgggacagtggagaaccacgaattggagaaaaaggagcaagaggctggagagcatggatgcaccaacaagaaaagggtggctgggttgctgttgacaatcctgatgatgatgatgaagaagagatagacgaggatgaagagataaaggataaaactctccccaagtggcacatttggatggatattgaatattctcgtgaatcaagacattggttaccgtggaggccagacaaaaccaaaaatcaagcagaagaagactgtgaagatccagaaagacaggtattatttgatgatcttgggccatctttaatccagctttctaatccagacattcagcatcaattactgtactcatttttgcaattcctgggagttccatgtataagtagactctttcctcccaacctctatattgccatggatgaaaataatatctttgacaacgtgctttctgatgaaaagccactgacttctattgatacaccactttctggattcaacagtattggtcatatggacacgatgctaaggaggagacatcacataggccactgtaaagatggagaggagttcatacagaatgtttttcatgttctatcccccctgttttcaggaaaggaaaaatcaaacctgtccatttgttggttacagtatgaaatatcaaaggtagttcagtgtatccaaacaaaaaagaagaagaagctgaaagctcaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaacagaaataaccttgctctctggaaactctacgcctacctggaatggctgcttggtaacactgacgatgctaggaaggtgtttgacacagccctttgcacagcagggacgggaggactgaagagcccccagctgtgcagccttagtctgctttatgctcagctggaagtggagctactgcaaagtctagaaggagctgttacctcacgtgctgttcatatattgaccaaattggctgaaagtggaccatacgcaccctacaatggacaagtgttatccgttagcgtcttgaaagctcgtaagacatacgagcatgcactgcaagactacttaaataaagcaccagtttctgatcaggacggggccagtaattctaatcagctggttaatttagttggctgttacacagtgttccagtatttgactgttggaattgatgctgcagaattagtatgtacgcaggctttggaaaagcttgaagctcctcatccacagaaatgtgagaatactgcagagacttccagcattcaacattttcccactgctcttgaggctgtcacactgctgcgtgcaaatttactcagattccacatgaaaattagcgtttatcctttgaatcctttgcgagaagcactaacagaggccctcaaacggtttcctagcaaccaggctctatggagagcatacatccagagccagaggaagtctcacagtgctagcaaggcacgaaggtttttcgatggcgtcacaaggtctactaactctttagagccatggctgtttgccatccaagcagagcagatgagaaaaaaacttactgagaatgtccagagatgttggtgaaatatattctactattcctgaaactgggttgacaaataggattatctctctatttgaacatgcgactcagagtgaaaatggtacccactgtccattgctgtggagaatgtatttaaactttctggtttcagtcggaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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