LOCUS       XM_046927600            8458 bp    mRNA    linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus trinucleotide repeat containing 6A
            (TNRC6A), transcript variant X1, mRNA.
ACCESSION   XM_046927600
VERSION     XM_046927600.1
DBLINK      BioProject: PRJNA698614
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052586.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8458
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="14"
                     /sex="female"
                     /tissue_type="blood"
                     /country="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..8458
                     /gene="TNRC6A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 8 ESTs, 927 long SRA
                     reads, 10 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="CGNC:4550"
                     /db_xref="GeneID:416570"
     misc_feature    1
                     /gene="TNRC6A"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             151..6060
                     /gene="TNRC6A"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6A protein
                     isoform X1"
                     /protein_id="XP_046783556.1"
                     /db_xref="GeneID:416570"
                     /db_xref="CGNC:4550"
                     /translation="

MRREFSRLGLRELEAKATKEVERKLSRAFLPHLCGTERRDLVQEEEEQLMEERKKRKEDKKKKEAAQKKAIEQKIKVPEQTKTSVSQPQPVTSNGTSTATSTNNNAKRATANNQQQQTLPRYPPREVPPRFRHQEQKQLLKRGQQLPVIAANLGSTPKVLNGQSGGSTVTTKQPVTNGEVPNSSKKQPGMPPIRDLVSHSPNQSDLNHSGLGSHYENSHWGPVSSNSDSSTNWDKVIVDGSDKEAWPSITGSDPELTSECMDTDSASSSGSERNLIIMASGSTGGENDGIRNGIGHGSQNKFVVGSNSNNVGNGSINGPWGLSHGTIISTCQVSVDAPDSKSESSNNRMNAWGTINSSSNGGLNPSTLNSNGNHGAWPVLENNGHALKGSVGSGNSGTNIQCSTVGQISNSQSINSKVGGSAHGSWGSLQENCDSEVNGTRKVSFSGQPQNLNTEMNGPNNTTNFMTSSLPNSAGSAQINELPNNTGHGAWRVSTMNHSQIQASPVTNGTSISHLSNGEAKNGGSYGTTWGAYGSNYSGDKCSGPNSQANGDTVNATLMQSGISGPGSTNFQINGNKGGGVWEAGTVNSQNMPWGSGNGASAGGSRRGWGNPAQNTGTNISNGEWSKLPSNQHSNESVNGNTRKFTNGWKSTEEDDLNSQSSAVSQITEQNSAWAKTGTGDGEGSTESTGCHEDRVATEGQNRERRKVDQHALLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGGSVTQTSSSGGCVDRPSPNNNDTSSVSGWGDPKSATRWGDSKGSNSQGGWEEDSAATVMVKSNQSWGSGKEEKSSWNDTQKMKQGWVEGQKASQGWAVSASDSWGENSRSNHWGETKKSSSGGSDSDRSVSGWNEPGKSNSVTWGGSNNTNPNNSSGWDEPAKSNQSQGWGDPPKSNQPQGWGDSSKPINSPEWNKQDVGSWGAPSATNKPPGSGWLGGPMPAPVKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNVPNSSSSSDQQAQVHQQLLSSSAMSSKESSSGSGWGEPSTPATTVDNGTSAWGKPMDTGTSWGEPISDAGGTSGWGNASLGQQAPNKPGPKSMQDSWCGDDMPLTGSRQTSWEEEEDVEIGMWNSSSSQEANTSLNWPPYMKKMPTKGIMKGGNKQDEAWINPFIKQFTNLSFSRESPEETIQSNKMDVSGGILQDKRMEIDKHGLNVGDYNRVVGKGPGSRPQISKESSMDRSPYFDKDGIVADESQNMQFMSNQNMKLPPSNSALPNQALGSLAGLGMQNLNSVRQNGNPSVFGVGNIAAQPRSMQQPPAQPLNSSQPNPRAQVPPPLLSPQVPVSLLKYAPNNGGLSPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQKVQNQRSMPSGGRQQQEQQGRSISMQQQMMQQSRQLDPNLLMKQQTPPSQQQSLHQPTMKSFLENVIPHATPELQKGPSPINSFSSFPIGFSPISTSEIPGMNSNLNVNMDMSSIKEPPQSRLRKWTTVDSISVNTSLEQNSSKHGAISSGFRLEESPFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYNVSLSSTAQSTSVARNSDSKSTWSPGSVTNTSLAHELWKVPLPPKSITAPSRPPPGLTGQKPPLSTWDNSLRLGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQGQSLTPSPGWQSLGSSQNRLGSIDGSHSFSNRNDLNHWNGAGLSGTSSGDLHGTSLWGSPNYSTSLWGTPSSNDTRGISSPSPINAFLSVDHLGGGGESM"

     misc_feature    3391..3750
                     /gene="TNRC6A"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:431279"
     misc_feature    4027..4578
                     /gene="TNRC6A"
                     /note="M domain of GW182; Region: M_domain; pfam12938"
                     /db_xref="CDD:432890"
     misc_feature    4651..5472
                     /gene="TNRC6A"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:435458"
     misc_feature    5494..5769
                     /gene="TNRC6A"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     GW182 autoantigen; Region: RRM_TNRC6A; cd12711"
                     /db_xref="CDD:410110"
     polyA_site      8458
                     /gene="TNRC6A"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gggcgggagcggcctcgggcgcgggaggagccgcggcggagcgctccgcggctgagctttgccctcccggcccggagccgttcgctccgctccccgccccgcactcccagccggtgcgcgggccgaggagatgaggagggatcagaggagatgaggagggaattctcgcggctgggtttgagagagttggaagctaaagctaccaaagaagtcgaaagaaaactaagcagggctttcctgcctcacttatgtggaactgagagaagggatttagtgcaagaagaggaagaacagttgatggaagaaaggaaaaagagaaaagaagacaagaagaagaaggaagctgctcaaaaaaaggccattgaacaaaaaatcaaagtgccagaacaaaccaagacaagtgtaagccagcctcagcctgtcacctctaacggcacttccacagcaaccagcactaataataatgccaagcgggccacagccaacaatcagcagcagcaaaccttgcctcgataccctcctcgtgaagtaccaccgcgatttcgacaccaggaacagaaacagcttctgaaacgaggtcagcagttaccagttatagctgcaaacctgggatctactcctaaagtattaaacggccagtcaggaggcagcactgtcacaaccaaacagccggtgaccaacggagaagtaccaaacagcagcaaaaaacagccaggcatgcctcccattcgggacttggtgagccactcccctaaccagtcagatctgaaccacagtggtctaggatcccattatgaaaattctcactggggaccagtctcttcaaatagtgactccagcacaaactgggataaagttattgtagacggctctgacaaagaagcatggccatcaatcactggcagtgacccagagttgacatcagaatgtatggacactgactctgcctctagctctgggtcagagagaaacctcattataatggcttcagggagcacaggtggtgaaaatgatggcattcgaaatggcatcggacatggttctcaaaataagtttgtggttggtagcaacagcaataatgtgggcaatggaagtattaatgggccttggggtttatcccatgggaccataataagcacatgtcaagtttctgtggatgctcctgacagcaaatctgaaagtagcaacaatagaatgaatgcttggggcaccataaactcttcatcaaatggagggttaaatccaagcactttgaattcaaatggcaaccatggtgcctggcctgtattggagaacaatggacatgccctgaaagggtctgtagggagtggtaattctggcacaaatattcagtgcagtaccgtaggtcagatatctaacagtcagagtattaactctaaagtgggtggttcagcccatggttcctggggaagccttcaggaaaattgtgattctgaagtaaatggtacaaggaaggtttcattcagtgggcaacctcaaaaccttaacactgaaatgaatggaccaaataacactactaactttatgacctctagtttaccaaactctgctggttcagcgcagattaacgaactgcctaataatacagggcatggggcctggcgtgtgagcacaatgaatcattctcagattcaggcctctccagttacaaatggcacttccatttctcaccttagcaatggtgaggcgaaaaatggtggatcttatggtactacatggggtgcctatggttctaattactctggagacaaatgttcaggccccaacagccaagctaatggtgacactgtgaatgcaactctaatgcagtcaggcattagtgggcctggcagcactaactttcaaatcaacgggaataaaggaggaggggtgtgggaagcagggacagtcaactcccagaatatgccatggggaagtggaaatggtgcaagtgctggcggaagtagaagaggatggggcaaccctgcacaaaacactggcactaatatttcaaatggtgaatggagtaaactgcctagtaatcagcattccaatgaaagtgtaaatggaaataccaggaagtttacaaatggatggaaatctactgaagaggatgaccttaacagccagagttctgctgtgtctcaaataactgagcagaatagtgcgtgggccaaaacaggtacaggggacggtgaaggtagtacagagagcactggatgccatgaagatagagtagctacagaaggccagaatcgagagagaagaaaagttgaccagcatgcattactccaaagtatagtaaacagaactgacttagatccacgtgtcctttccaattctggttggggacagactccaatcaaacagaacactgcctgggataccgaaacatcaccaagaggtgaaagaaaaactgacaatgggacagaggcctggggaggctctgtgacacagacttctagctcagggggatgtgtggatagacctagccctaataataatgatacctcatctgtatcagggtggggagatccaaagtctgctacaaggtggggagactccaaagggtcaaatagccaaggggggtgggaagaggattctgctgctacagtaatggtcaagagcaatcaatcatggggaagtggcaaagaggaaaagtcatcttggaatgacacgcagaagatgaaacagggatgggtagaaggacaaaaggccagccagggttgggctgtttctgccagtgacagctggggtgaaaattcaagaagtaaccattggggtgagactaagaaatccagttcaggaggtagcgacagtgacagatcagtatctggttggaatgagccaggtaaatcaaattctgttacttggggaggtagtaataatacaaacccaaataattcttcaggatgggatgagcctgcaaagtctaatcagagccagggctggggagaccctcctaaatccaatcagcctcaaggctggggagattcttcaaagccaatcaactctccagaatggaacaaacaagacgttggatcttggggagcaccgtctgccaccaataaaccaccgggctcaggctggctggggggaccgatgccagccccagtgaaggaggaggaacccactggctgggaggagccatcccctgaatcaatacggcgcaaaatggaaattgatgatggaacttctgcttggggtgatccaagcaaatacaactacaaaaatgtgaacatgtggaataaaaatgtcccaaacagtagcagcagttcagaccagcaagcacaggtacatcagcagctactgtcttcaagtgccatgtctagcaaggagagcagttcgggttctggttggggagagccttctactccagccactactgtagataatggaacttcagcgtggggtaagcccatggatactggtactagctggggagaacccatcagcgatgcaggaggcacctctggctggggaaacgcttctcttggtcaacaggctccaaataaacctgggcctaaatctatgcaagatagttggtgtggagatgatatgccattgacaggcagtcgtcagaccagctgggaggaagaagaggatgtagagattggaatgtggaacagcagttcttcacaagaagctaacacatctttgaactggccaccctatatgaagaaaatgcccacaaagggaataatgaaaggtggaaataagcaagatgaagcatggatcaatccattcattaagcaattcacaaatctcagtttttcaagagaatcaccagaagaaaccatacagagcaataagatggacgtgtctggagggatattacaagataagagaatggagattgataagcatggcctcaatgttggagattacaatcgtgtggttggaaaaggccctggttctcgtcctcagatttccaaagagtcttccatggatcgcagtccttattttgataaggatggcattgtagcagacgagtcccaaaacatgcagtttatgtccaatcaaaacatgaagcttcccccttcaaatagtgcactacctaaccaagcccttggctctctggcagggctgggtatgcaaaacttgaattctgttagacagaatggcaatcccagtgtgtttggtgttggtaatatagcagcacagcccaggagcatgcagcagcctccagcacaacctcttaattcatctcagcctaatccacgtgctcaagtgcctcctccattactatcccctcaggttccggtatcattactgaagtatgcaccaaacaacggtggcctgagcccactttttggcccacaacaggtagccatgttgaatcaactgtcccagttaaaccagctttctcagatctcccagttacagcggttgttggctcagcagcaaaaagtgcagaatcaaagaagcatgccttctggtggtcgtcaacagcaggagcaacagggtcgatctattagtatgcagcaacagatgatgcaacagtcccgtcagcttgatccaaacctgttaatgaagcagcaaactccaccctctcaacagcagtcactccatcaacccaccatgaaatctttccttgagaatgtcataccccatgctactcctgagctacagaaagggccatcaccaataaattcattcagcagctttcctataggcttcagtccaatttctacttcagaaattccaggaatgaactcaaacttgaatgtaaacatggatatgagcagtattaaagagccaccacaatctcgattgaggaaatggactacagtagacagcatttctgtgaacacatccttagagcaaaactccagcaaacatggtgctatttcaagtggttttaggctggaagagtctccgtttgttccatatgactttatgaacagcagtacttcaccagccagtcctcctggatctattggagatggctggccccgtgccaaatcgcctaatggctctagcagtgttaactggccaccagaatttcgtcctggtgagccatggaaaggttatccaaacatcgaccctgaaactgacccttacgtcactcctggcagtgtcataaacaatctttcaattaatactgtgcgggaagttgaccacctcagggacaggaacagtgggtcatcctcatctttgaacaccacgctgccttcaactagtgcctggtcatccattcgtgcctccaactacaatgtttccctcagcagtacagcacaaagcacttcagtagccagaaacagtgattccaaatcaacatggtctcctggatcagtcactaacacctctctggctcatgagctgtggaaggtccctttgccacctaaaagcatcactgctccgtcccgcccacctccagggctaacaggccagaaaccacctttgtccacttgggataattcccttcgtttgggtggaggatggggaaattctgatgccagatatacccctggttcaagctggggtgagagcagctcagggagaataacaaattggcttgttctaaaaaaccttacacctcagatcgatggctcaaccctgcgtactctgtgcatgcagcacggtccactaataacattccaccttaacctcccacatggtaatgctttggtccgttacagttcaaaagaagaggtagtgaaggcacaaaaatctctgcacatgtgtgttttagggaacactactattcttgctgagtttgccagtgaagaggagattagtcgcttctttgcacaaggccagtctctgactccgtctcctggctggcaatctcttggatccagccagaaccgactcggatccattgatggttcccattcgttctcaaaccgtaatgatctaaatcactggaatggtgctgggctgtcgggaactagcagtggagaccttcatggcacttcactttgggggagccccaactattccacgagcctgtggggcaccccgagcagcaatgacaccaggggaattagcagcccatcccccatcaacgctttcctttctgttgaccacctaggtggaggtggagagtccatgtaaccttttacttttttcaactaataaactgtgacctcaaaatgtaacaaagcagcactaatttggacttttcacctacagcaaggggggtcacctgtggaaacagttactttctgcacattttccactttgttttagcccaaaacatatcagtttgaatacttgaatcatgcaggccaatattataatgtgaaaaagtatatatttacacttccagatagtgctatccatataaaactgcttggaatgagctcatttgtgtatattcatcatgtttattctttgaattccttttttttttttttgcattttgctgatgatgttggagtatgagcttttttaactttgcactgaatgatgttctctctgtccaatcggcaatatcggggaggcagcagttcacgtgtaaatgtttactcaaggatgttcttaacaaacagtgtgcgctctctactatgccttgatgtatgcctaccttattgtggtattgtggcgtttaaagatcaagttatgatactgacttaggattatgaatgaaagtattgcaccagttttttcatgtataaaactaaagaatttagctctacagtttaaaaaactgtggccacagctgtgacttgcaacccagcctgcaagccaggggggtcctgcactttcaataggctttcaattttgttttgggggtgcccgtgtcgggacctccttgtttacagaatatttgtttttgttttttgagaaaaatgtttactcttccatcattttaaaaatttttaaaaagacaaaaaaaattgagaatgaaaaagatgctttctatctctgggaataatgaacagtgtttggccatgtccttttgttttctattcctgtatcctaaatcaaagagcatggctctcaggaaaaccagttccccagtaaaaactccttgtagtttcttataggaaaaaaaaaaaaactcaacttttagcactgatgatacttattgctctgtaagacttttctctgccaaaaaatacacgcttcgagctggagttggacattctgctttctgacgctgtctttttattagtgagtggtggtggtttgctaataacccgtagttatacgattcttttgtaatcccatcgagtggctgtttctgctcttgtgactgtgttaacgtttaactgtcgtaccttaaagccgaactgagtaactatgcatactgtaaccaagtgattgggcttacagaattgtttgttgtataaaagttttaaatgtttgaaaagttctcgcaaatactttcttgcaaatgtaacgagttacatctctttgccacaaaaggtattatataatgcttgtttagtcggtggattcaagactaggcaagggtaaaaattttaacagtgcagaaatcgccatcatttcattgccttgattctaactgtttgtgtccgaagatgcaaaagaagtcagtggcttttaactgtttacaaatagaatgtgattgtaaaatgtacagtttggttgtgtttgaattatgaagtttctccagatattaataaatcatgatgtttttggctgctcagcatataactgtctattttttgtgactttatttgtaggctgttttctatacgatgaaaatatcaaacgatatagctctgtatccccatagtttgatttttcttttagccttctgatttctttttttttttctttttatgaacaaatctgcattttatcctagcaaaactctccctcagcgtgcccactgtgagctgagaatctaagtgcagaaacctgcagcttgcttttccttttctatttgagcaccttcggaatcccgttgcccttcttatactcccgccaccccccgttcagacgccccccaccatttgtgcccggctagatgctcaagaggacacttgcaaataaggagagcattttggaaaataaactttaatgcttaaaacgtactggtgtttaaatttatacctcatttacattaatcatgacaaacaatgcagcagcgcttactttgtatttcacttcacagtggcttagcttgttctgaaatggctagagggcagaccatatatgtacatagtatgatgtgacttcaacaatctgttagcctttcttttccaattgccggatgtaagtcattaactctgttggatgccagcattgtgtgttattggacacttctctgtacctactcgctatgaacgacgctgtcccagcccaagctggctccccaagtctgctctgaccccggtgaaaccgttgcctgataatctttcaggactccgcatcgagtggaactgacatcacgcccgcgttgattgtattgtcaaagtgtttggacttctttcactgagcttgttacgtggaaataaaatgtggttggttttaaagctga

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