LOCUS       XM_040649392            2874 bp    mRNA    linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus DEAD-box helicase 31 (DDX31), transcript
            variant X2, mRNA.
ACCESSION   XM_040649392
VERSION     XM_040649392.2
DBLINK      BioProject: PRJNA698609
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052548.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 1, 2022 this sequence version replaced XM_040649392.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="17"
                     /sex="female"
                     /tissue_type="blood"
                     /geo_loc_name="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..2874
                     /gene="DDX31"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 mRNAs, 14 ESTs, 167 long SRA
                     reads, 12 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 93 samples
                     with support for all annotated introns"
                     /db_xref="CGNC:2579"
                     /db_xref="GeneID:427759"
     misc_feature    1
                     /gene="DDX31"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             44..2584
                     /gene="DDX31"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX31
                     isoform X2"
                     /protein_id="XP_040505326.1"
                     /db_xref="GeneID:427759"
                     /db_xref="CGNC:2579"
                     /translation="

MTISCPPLCTSLSCSSTAMLRAVLTDTRWSSDQASGSKPLTPCCSRTAGSLLTAVSRNPALAAAAAASSTSESSPSGGSSSPAAGTDGLPPLSAAAILPPPHGRLARTARAPPLPPKAPRRCGAVPALPERGRLGAMEEGGPLLLNLGSAPRRPNALKRKLQSSPHGNPPLKRKPKPSVNNFKKRVAETGTREKGRSSKRSLPKKQLNANQNESQKSKLFIKTSSLFRNNPDIPEIHRKAVQQVQENVFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQTIPVLLQGKDALVRSQTGSGKTLAYGIPLVQSLQGMQSKIQRSDGPYALVLVPTRELALQTFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVTVILNALNAERETRQNVLLSATLTEGVTRLADISLNDPIRISIADEIRESLKPALQTEKEANSSSNRMDQENFAVPEKLKQYFMMVPSKLRLVTLAAFVLEKCKYEKQHKMIIFFSSCEQVEFHYELLVNVLSGELESEQPKRSSVSSVQLQFLRLHGNMEQEERTEVFQEFLKSKTGILLCTDVAARGLDLPQVTWIVQYNAPASPAEYIHRIGRTARIGCHGNSLLVLAPSEAEYVSLLASHKINVSEIKMEKVLSSLMKDDRFRLRRPGSKKSYGVDPQEVRERATVLQTQFENYVHSSEGTIRWAKKALQSFLCAYTAYPRSLKHIFHIKSIHLGHVAKSFGLRDAPQNLTTLPTANSKKKTKPRAKRSDLLKKTHGKHRLAEILRSEYSSGMDTGVSKVKKKKKKKQTKTGDQQIPV"

     misc_feature    <305..>601
                     /gene="DDX31"
                     /note="tegument protein VP22; Provisional; Region:
                     PHA03381"
                     /db_xref="CDD:177618"
     misc_feature    800..2176
                     /gene="DDX31"
                     /note="Superfamily II DNA and RNA helicase [Replication,
                     recombination and repair]; Region: SrmB; COG0513"
                     /db_xref="CDD:440279"
     misc_feature    830..1441
                     /gene="DDX31"
                     /note="DEAD-box helicase domain of DEAD box protein 31;
                     Region: DEADc_DDX31; cd17949"
                     /db_xref="CDD:350707"
     misc_feature    order(857..862,866..874,881..883,935..958)
                     /gene="DDX31"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350707"
     misc_feature    2189..2371
                     /gene="DDX31"
                     /note="Domain of unknown function (DUF4217); Region:
                     DUF4217; pfam13959"
                     /db_xref="CDD:464056"
     polyA_site      2874
                     /gene="DDX31"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cagcaggcaggcggcgccgggcgcgggcacggccgtgcggtggatgaccatctcctgcccgccgctgtgcacgtcgctgagctgctccagcacggcgatgctgcgggccgtgctcaccgacacccggtggtcctccgaccaggccagcggctccaagccgctgaccccgtgctgcagccgcaccgccggctctctcctcaccgccgtcagtcggaacccggcgctggccgccgcggccgccgcctcctccaccagcgaatcgagccccagcggcggctcctcctcccccgccgcgggcactgacgggctgcccccgctctccgccgccgccatcttaccgccgcctcacggccgcctcgcccgcaccgcgcgtgcgccgccgctgccgccgaaggccccgcgccgctgtggggctgtcccggcgctgcctgagcgcggccgcctcggcgcgatggaggagggcgggccgctgctcctcaacctcggctcggctcccaggcggcctaatgctctgaaaagaaagctccagtcgtccccacatggaaacccacctctgaaacgtaaacctaagccatcagtaaacaacttcaagaaacgtgttgcagagactggcaccagggaaaagggaagatcatcaaaaaggtctcttcctaagaagcaactgaatgccaaccaaaatgaaagccagaaaagcaaacttttcattaagacatccagcctgtttagaaacaaccctgatatcccagaaattcacagaaaagcagtgcagcaggtgcaggaaaatgttttcactacagactctttcagccagttggacctccatccacacctgatagccacaataactacagttctgaagatatgtagtatgaccagtgttcagaagcaaacaattcctgtgctcctgcaaggcaaagatgctctggtgagatctcagactggttcaggtaaaactcttgcctatggaattccacttgtacagtccttgcaaggaatgcaatccaaaatacagcgaagtgacgggccttatgcactggtgttagtcccaacaagagagcttgcactccagacttttgatacaatacagaagctactcaagccatttacctggattgttcctggagtgcttatggggggagaaaagagaaaatcagaaaaagccagattacggaaggggataaatatccttatttcaactcctggtcgcctggttgatcacatcaagtccacggaatgtattcatttccgtcgcactcagtggctgatcattgatgaagcagacaggatcctagacctgggctttgagaaggatgtaactgtgatacttaatgctttaaatgctgagagggagacgcgtcagaatgttctgctctcagccacactcactgaaggagtaacacggctggctgatatcagtttgaatgatcccatcagaatttccatagcagatgaaatccgggagagtctcaaaccagcattacaaacagaaaaagaagccaatagttcctcaaaccgtatggaccaggaaaactttgctgttccagagaagcttaagcagtatttcatgatggtccccagcaaattgaggcttgtcacattagcagcttttgtcctagagaaatgcaagtatgaaaagcaacataagatgatcatctttttctccagttgtgaacaagtggaattccactacgagctccttgttaatgtcctttcaggagagctagagtctgaacaacctaaacgttcatctgtctcctctgtgcaattacagtttctacgactgcatgggaacatggaacaggaagaaagaacagaggtcttccaggagttcctaaaatccaaaaccggcatcttactttgcactgatgtcgcagcacgtggactagacctgcctcaagtcacgtggattgtgcagtataacgctccagcttcacctgcggaatacatccaccggatcgggaggacggctcggattggctgtcacgggaacagcctgcttgtcctggcgccttcggaggcagaatatgtcagcttgctggcttctcacaagattaatgtctcagagataaagatggagaaggtactatccagcctgatgaaagacgatcgcttcaggctgcgcagaccaggaagcaagaaatcctatggcgtggaccctcaggaagtccgggagcgggccaccgtcctgcagacacaatttgagaattatgttcactccagtgaggggaccatccggtgggcaaaaaaagcactgcagtcttttctttgtgcctacaccgcctatcccagaagcctcaagcacatcttccacatcaaatctatccacctgggtcatgtggccaagagctttggcctgagagatgctccccagaacctgactactcttccaactgctaactcaaagaagaaaaccaaaccaagagcaaaaaggtctgaccttctcaagaagacccatggcaaacatcgcctggctgagatcttgcgatctgaatattccagtgggatggacactggtgtatccaaggtcaagaagaagaagaagaaaaaacagactaaaactggcgaccagcagatcccagtatgagccaggacctcccagtcatttgctgcacaacctgctggagtacgtcagccagaggtcagggtgacctgccagactgactgacgagtggctcagtttgtcaggcaaaaatggggagggctcttggagatgctgacctcctccctcttatcccatagttccaaatggaattgaatccagacgtgtcctgttgcactgctgcaattatatgtggcttcctgaagatgcagcttgtttctaaggtgatattttgtgagaaaaataaaagagtttaattacggttttctgagaaa

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