2024-05-03 08:51:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015287744 4146 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_015287744 VERSION XM_015287744.4 DBLINK BioProject: PRJNA698609 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 1, 2022 this sequence version replaced XM_015287744.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4146 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="5" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..4146 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 7 ESTs, 366 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 89 samples with support for all annotated introns" /db_xref="CGNC:8113" /db_xref="GeneID:423404" misc_feature 1 /gene="NRDE2" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 51..3533 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_015143230.2" /db_xref="GeneID:423404" /db_xref="CGNC:8113" /translation="
MALFPAFAGAPEPGEAPAGSSEGSRKELDWLSNPSFSTEDALLLHQRTTEAANLTPEKSPLISRSTSRSDLSGESDTDESLKKSSKKRKKKKKKHHHYKTKKKAKGDSSSSESDLDTKCIKDKAAANLDDKTSNLTSNRSVWLDDVQAFTTETFRIDKKSDPANWAYKSLYRGDIARYKRRGESCLGLDTKKQCIAWDSPASEKKQLQRRPERYFSKSNVKTLNSDGIPVCNKSSPSDPAAFIPVLHVETSDPSDTTEVNPLGIYDPSTTEWLQGKGYKGEEHEPVNTQQAFQEPGINVNPILMTKVEEHNKKVRENPRDIQAWMNFVSFQDELMRGPSPYASMGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLSVCTEFWESPAVIKEWQKLIFIHPNNPELWKKYLLFCQSQFSTFSVSKINSLYGKCLTTLAAVQDGSMVSHPPLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRIGEKGARGWRAWMHQQEKGGWVAVDNPDDDDEEEIDEDEEIKDKTLPKWHIWMDIEYSRESRHWLPWRPDKTKNQAEEDCEDPERQVLFDDLGPSLIQLSNPDIQHQLLYSFLQFLGVPCISRLFPPNLYIAMDENNIFDNVLSDEKPLTSIDTPLSGFNSIGHMDTMLRRRHHIGHCKDGEEFIQNVFHVLSPLFSGKEKSNLSICWLQYEISKVVQCIQTKKKKKLKAQGRKSKKLAKNLLKAPDNRNNLALWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSPQLCSLSLLYAQLEVELLQSLEGAVTSRAVHILTKLAESGPYAPYNGQVLSVSVLKARKTYEHALQDYLNKAPVSDQDGASNSNQLVNLVGCYTVFQYLTVGIDAAELVCTQALEKLEAPHPQKCENTAETSSIQHFPTALEAVTLLRANLLRFHMKISVYPLNPLREALTEALKRFPSNQALWRAYIQSQRKSHSASKARRFFDGVTRSTNSLEPWLFAIQAEQMRKKLTENVQRADVGEIYSTIPETGLTNRIISLFEHATQSENGTHCPLLWRMYLNFLVSVGKKERGKGLFYKAIQNCPWAKVLYMDSVEYFPEQLQETLDLMTEKELRVRVPIEELDLLLEV"
misc_feature 507..785 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(507..533,540..545,555..560,564..566,570..614, 621..629,633..641,663..671,681..686,690..695,702..722, 741..752,762..785) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 975..1973 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" polyA_site 4146 /gene="NRDE2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gccgctccgcggggcacttcgggcagctactactggcgacgggctgggacatggccttgttcccggctttcgccggtgccccagagcccggggaggccccagccggcagcagcgagggctccaggaaagaattggactggcttagtaacccaagcttctctacggaagatgccctgttactgcatcagcgcactacagaagctgcaaatctcacccctgaaaaatcacctctaataagtaggagtacttcaagatcagacttatcaggggaaagtgatacagatgagagtctgaaaaagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaagggggactccagtagcagcgaatcagacctggacacaaagtgcatcaaggacaaagctgcagcaaatctagatgataaaacatcaaatcttaccagcaaccgctctgtttggctggatgatgtccaggctttcacaacagaaactttcagaatagacaaaaaatcagaccctgcaaactgggcctacaaatccctgtatcgaggggatattgcaagatacaaaaggagaggagagtcctgtcttggcctagatacaaagaaacagtgtatagcttgggacagtccagcatcagaaaagaagcaattgcagaggcgacctgagcgttacttctcgaagagcaatgtgaagaccctgaactcagatgggattcctgtttgcaataaaagttctccatctgacccagcagcatttataccagttctccacgtggaaaccagtgatccttctgacacaacagaggtaaatcctcttgggatttatgatccatcaactacagagtggctacaaggaaaagggtacaaaggtgaagaacatgagcctgtaaatacgcagcaggcgtttcaagagcctgggataaatgttaaccccattctaatgacgaaagtggaagaacataataagaaagtcagagaaaacccaagagatattcaggcttggatgaatttcgtttcatttcaggatgaattaatgagaggacctagcccttatgccagtatgggagagcaggaagtaagaagaaaatcactgaagttaatcttggagaagaaactagctattttagagagggcaattgaaagcaatccaagtaacgttgatctgaaactcgccaggctgagtgtttgcacggaattctgggaatcaccagctgtgatcaaagaatggcagaagctaattttcatacatcccaacaatccagagctgtggaagaaatatctcctgttctgccaaagtcaattcagtaccttttctgtttcaaaaattaatagcctctatggaaaatgtttgactaccttggcagctgtacaggatggcagcatggtatcacatcctccgctgcctggcacagaagaagctatgcttgccatatttattcagcagtgccactttctgagacaagctggccattctgagaaggcggtgtcattgtttcaggctctgattgacttcaccttcttcaaacctgacagcgtaaaagatctgccaacaaagggacaggtggaattctttgaacccttttgggacagtggagaaccacgaattggagaaaaaggagcaagaggctggagagcatggatgcaccaacaagaaaagggtggctgggttgctgttgacaatcctgatgatgatgatgaagaagagatagacgaggatgaagagataaaggataaaactctccccaagtggcacatttggatggatattgaatattctcgtgaatcaagacattggttaccgtggaggccagacaaaaccaaaaatcaagcagaagaagactgtgaagatccagaaagacaggtattatttgatgatcttgggccatctttaatccagctttctaatccagacattcagcatcaattactgtactcatttttgcaattcctgggagttccatgtataagtagactctttcctcccaacctctatattgccatggatgaaaataatatctttgacaacgtgctttctgatgaaaagccactgacttctattgatacaccactttctggattcaacagtattggtcatatggacacgatgctaaggaggagacatcacataggccactgtaaagatggagaggagttcatacagaatgtttttcatgttctatcccccctgttttcaggaaaggaaaaatcaaacctgtccatttgttggttacagtatgaaatatcaaaggtagttcagtgtatccaaacaaaaaagaagaagaagctgaaagctcaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaacagaaataaccttgctctctggaaactctacgcctacctggaatggctgcttggtaacactgacgatgctaggaaggtgtttgacacagccctttgcacagcagggacgggaggactgaagagcccccagctgtgcagccttagtctgctttatgctcagctggaagtggagctactgcaaagtctagaaggagctgttacctcacgtgctgttcatatattgaccaaattggctgaaagtggaccatacgcaccctacaatggacaagtgttatccgttagcgtcttgaaagctcgtaagacatacgagcatgcactgcaagactacttaaataaagcaccagtttctgatcaggacggggccagtaattctaatcagctggttaatttagttggctgttacacagtgttccagtatttgactgttggaattgatgctgcagaattagtatgtacgcaggctttggaaaagcttgaagctcctcatccacagaaatgtgagaatactgcagagacttccagcattcaacattttcccactgctcttgaggctgtcacactgctgcgtgcaaatttactcagattccacatgaaaattagcgtttatcctttgaatcctttgcgagaagcactaacagaggccctcaaacggtttcctagcaaccaggctctatggagagcatacatccagagccagaggaagtctcacagtgctagcaaggcacgaaggtttttcgatggcgtcacaaggtctactaactctttagagccatggctgtttgccatccaagcagagcagatgagaaaaaaacttactgagaatgtccagagggcagatgttggtgaaatatattctactattcctgaaactgggttgacaaataggattatctctctatttgaacatgcgactcagagtgaaaatggtacccactgtccattgctgtggagaatgtatttaaactttctggtttcagtcggaaaaaaggaaagaggtaaaggattgttttacaaagccattcagaactgtccttgggcaaaggtactctacatggactcagtggagtacttccctgagcagctgcaggagacacttgatctcatgactgaaaaagaattaagagtgcgggtaccaattgaagagctggatctgctcttagaggtttagaagaagataaggatgaagaaaatacaaagccacttctaaaactaacacttagaactcttttcaaacaagaactcctttgtgacttgagtactgtgtgactccctctccgccccccaagtttttatacaagttgctaccaaaatggagttctatgtgcaagcattctgggatcaagtactgcacttagctcacaaaaacacatccactcactgaagtagtgctgacttccacaggataccctcttacaaacatagccttgttgaacattgcccgcatttcttatcctattgtttgaagttacattccctagagttcagtagagattccatacatgctaactatagcttcgtgagccacacaggaaataaacacctgctcattgagtactccactctcttccaattggcagatctcagtaatttccttcggcttggtatgcacgcttatataagtactgagtcacagcaagttacatctgttcatgaacagctggtaaaagccaaatcttattttcaacagacacctattatggacttgtgttgggatgttttgacaaatgactgtttcgatgtgaatatttaggaaatatataccttaatttttataattcaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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