LOCUS       NM_001400492            4508 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus matrin 3 (MATR3), transcript variant 14, mRNA.
ACCESSION   NM_001400492
VERSION     NM_001400492.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 4508)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 4508)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4508)
  AUTHORS   Hisada-Ishii S, Ebihara M, Kobayashi N and Kitagawa Y.
  TITLE     Bipartite nuclear localization signal of matrin 3 is essential for
            vertebrate cells
  JOURNAL   Biochem Biophys Res Commun 354 (1), 72-76 (2007)
   PUBMED   17223080
  REMARK    GeneRIF: Exogenous cmatr3 rescued the HeLa cells where human matrin
            3 was suppressed by RNA interference, but cmatr3 containing
            deletions at either of the basic amino acid clusters or the linker
            could not.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000256.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267649.169641.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA103992290,
                                           SAMEA103992323 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-216               JAENSK010000256.1  718201-718416       c
            217-1295            JAENSK010000256.1  709460-710538       c
            1296-1357           JAENSK010000256.1  704700-704761       c
            1358-1399           JAENSK010000256.1  703999-704040       c
            1400-1503           JAENSK010000256.1  703580-703683       c
            1504-1556           JAENSK010000256.1  702510-702562       c
            1557-1682           JAENSK010000256.1  701914-702039       c
            1683-1808           JAENSK010000256.1  701185-701310       c
            1809-1979           JAENSK010000256.1  700806-700976       c
            1980-2111           JAENSK010000256.1  699534-699665       c
            2112-2155           JAENSK010000256.1  698540-698583       c
            2156-2546           JAENSK010000256.1  697688-698078       c
            2547-2940           JAENSK010000256.1  695787-696180       c
            2941-4508           JAENSK010000256.1  691941-693508       c
FEATURES             Location/Qualifiers
     source          1..4508
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="13"
                     /map="13"
     gene            1..4508
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="matrin 3"
                     /db_xref="CGNC:1772"
                     /db_xref="GeneID:373948"
     exon            1..216
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            217..1295
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    384..386
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="upstream in-frame stop codon"
     CDS             405..2954
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="isoform 4 is encoded by transcript variant 14"
                     /codon_start=1
                     /product="matrin-3 isoform 4"
                     /protein_id="NP_001387421.1"
                     /db_xref="CGNC:1772"
                     /db_xref="GeneID:373948"
                     /translation="

MSKSFQQSSLSRDSQGHGRELSAGIGLLAAATQSLNMPASLGRMNQGTARLASLMNLGMSSSLNQQGSHSALSSGSTSSHNLQSIFNIGSRGPLPLSSQHRGDADQATNILASFGLSARDLDELSRYPEDKITPENLPQILLQLKRRRAEEGYGRDGRSSTREPPYRVPRDDWEEKRHFRRDSFDDRGPSLNPVVDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDESFYGETSHNYHKFDSEYDRMGRGPGPERSLFEKKRGAPPNSNIEDFHGFLPKGYPHLCSICDMPVHSNKEWNHHINGATHGRRCQLLLEIYPEWNPDSDSGHGMGDPFMLQQSTNPAPGILGPPPPPFHLGGPPVGPRGAGNGNMQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGIITNHLILNKINEAFIEMSTTEDAQAAVEYYSTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKTEAPKPELGRVIHLSNLPHSGYSDNAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDALAMVEHCANKALWFQGRCVKVDLSEKYKKLVLRIPNKGVELLKKDKTRKRTYSPDSKDSPSDKKSKTDATQKPESGTVEDKAKEEKQDDTAEPSGTKSSEQADQDEPSLLLESEDELLVDEEEAAALLESGSSAGDDADVANLTDVTTEEKKDPADDVTVKTEGNVVANPATKKKLKKRYVGGFPRSMEGFVTLDEVGDEEDSDHQKLRKSGLAVKPAGKNDDSLAEIKVDKIEEPEQENETLENGTKTEDNLKAEAVEASDTTAAQDPEKNAHENIDTQDEQETKSVQEKALIPDEFRIGPYQPNVPVENSG"

     misc_feature    1245..1349
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="U1-like zinc finger; Region: ZnF_U1; smart00451"
                     /db_xref="CDD:197732"
     misc_feature    1566..1793
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="RNA recognition motif 1 (RRM1) found in vertebrate
                     matrin-3; Region: RRM1_MATR3; cd12714"
                     /db_xref="CDD:410113"
     misc_feature    1863..2102
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="RNA recognition motif 2 (RRM2) found in vertebrate
                     matrin-3; Region: RRM2_MATR3; cd12715"
                     /db_xref="CDD:410114"
     misc_feature    <2139..2885
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904;
                     TIGR00927"
                     /db_xref="CDD:273344"
     exon            1296..1357
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1358..1399
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..1503
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1504..1556
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1682
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1683..1808
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1809..1979
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1980..2111
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2112..2155
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2156..2546
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2547..2940
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2941..4508
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcggcgcgaggtggcaatgtcggccgtgccgaggggaggccgccccgctgccggtttgcgttgcttttttttttcccctttgccagaacattctaacgcgccgagcggggcccggagcccgttctgacagacgcctccgcgcaggtaacggctccgtcccgccgggcgccgggcctaggagcggcgggactatgggcggccgcggcccggggcagaattgtctggtgtttctcagcttgaagaagatctgcagtcattattgatcctctttcttggcgttaccattttcgaagtgaagtttgcctagctttctagtgcgagctttcttttcagccatcttaaaccaaaccaaacaaacaaacaaagattttgatccgtaaagtagacaagctatagttctacaatgtccaagtcattccagcagtcatctctgagtagggattcacaaggtcatgggcgtgagctctctgcaggaataggccttcttgctgctgctacccagtctttaaatatgccagcatctcttggaaggatgaaccagggtactgcacgccttgctagcttaatgaatcttggaatgagttcttcattgaaccaacaaggatctcatagtgcactgtcttctggtagtacctcttcccataatttgcagtctatatttaacattggaagtagaggtccgctccctttgtcttctcagcaccgtggagatgcagaccaggccactaatattttggccagctttggtctgtctgctagagacttagatgaactgagtcgctatcccgaggacaagattactcctgaaaacttgcctcagatccttctacaacttaaaaggaggagagctgaagaaggttatggtagagatggcagatcatccacacgggaaccaccgtacagagtacctagggatgattgggaagaaaaaaggcattttagaagagatagctttgatgatcgtggtcctagtctcaacccggtagttgactatgaccatggaagtcgttctcaagaatctggttattatgacagaatggattatgaagatgacagattgagagatggagaaaggtgtagggatgaatctttctatggtgagacttcgcataactatcataaatttgacagtgagtatgacagaatgggtcgtggccctggtcccgagagatctctctttgagaaaaagagaggtgctcctccaaatagcaatattgaagacttccatggattcttaccgaagggttatccccatctgtgctctatatgtgatatgccagttcattctaataaggagtggaatcaccatatcaatggagcgactcatggccgacgctgtcagctgctgcttgaaatatatccagaatggaaccctgacagtgattcaggacatggaatgggcgatccctttatgttgcagcagtccacaaaccctgcaccaggaattctgggacccccaccacctccattccacctgggagggcctcctgttgggccaagaggagctggaaatggcaacatgcaaggaccgagacacatgcagaagggcagagtggaaacaagcagagttgttcacatcatggatttccagagagggaagaacttgagatatcaattgcttcagcttgttgaaccatttggaataattacaaatcacttgattctaaacaaaatcaatgaggcatttattgaaatgtcaaccactgaagacgctcaggctgcagtagagtactattcaacaacacctgcactggtatttggtaaaccagtcagagtccacctgtcgcagaaatacaaaaggataaagaaacctgaaggtaaacctgaccaaaaaacagaggcaccaaaaccagaacttggtcgtgtgattcacctcagcaatttacctcattcggggtactctgataacgccgtgctcaagctggctgaaccatatggaaaaattaagaactacatactcatgaggatgaagagccaggctttcattgaaatggagaccagagaagatgctctagccatggttgaacattgtgccaacaaagctctttggttccaaggcagatgtgtgaaagtggatctatctgaaaaatacaagaaattggtgttgaggattccaaacaaaggagttgaacttctgaaaaaggataaaactagaaagagaacatattctccagacagtaaagactctccaagtgataagaagtctaagactgatgctactcagaagcctgaaagtggcactgtagaagataaagcaaaagaggagaagcaagatgatactgctgagccatcgggcactaaaagcagcgagcaggcagaccaagatgagcctagtttactccttgaatctgaagatgagctcctagtggatgaggaggaagcagcagcactgctggaaagtggcagctcagcaggagatgatgcagatgttgccaatttaactgatgtgactactgaagaaaaaaaggacccagctgatgatgtgaccgtaaaaaccgagggaaatgttgtggccaatccagcaacaaagaaaaaacttaaaaagcgatacgtgggtggctttccacggagcatggaaggctttgtcactctagatgaggttggtgatgaagaagactcagatcatcagaaacttcggaagtcgggtttggcagtaaaacctgctggcaaaaatgatgatagtttggcagaaatcaaagtagacaagattgaggagccagagcaggaaaatgaaacgttagaaaatggtaccaagactgaagataatctgaaggctgaagctgttgaagcttccgacaccacagcagcacaagatcctgagaaaaatgcccatgaaaatatagacacccaggatgaacaggaaacaaagagtgtccaagagaaagctcttattccagatgaatttaggattgggccataccagccaaatgttcctgttgaaaattctggataaaatggcagaagactacaggcaaaagaaagaagcataaaaagaaggatggatgtaaggaaaacagtggctttgttcttattgttaatctttttttaaaagcagtacaagtagtagatggaaatactgtattctttttttttttgttttagtgagatacggtagatgttataggtctgttcatgtgttcagtgttgtagcaaaaagcataagcagttaagttaatgaaaaaaatttgttcttcatgtgggaatggcaacaagttttcgttttgacactgagctattaaagaaaaaatcttgcatccttgtggaacgctcgtctatggcaagaaaattttcttgaagtgaaatttactactttcaagcttcgaaaattcgcctatccattctcaataaaaaataaaaagtaacactgtatttttatttcatctagaacattccgtatttcagtctgagcctagcagatacctaatttggagtgtgaggctgtcattgcatttcacttttgaaaagtctttaaatgtaagttgcatttttaaatgttgaattgcagtttcttttaatgtcattgttgttatatagcaaataggaaaattagtgattagtcagctttacaactttgtgattttttttcctaagctcttgatagactttcctattcagctataccttgtatttttagtgagaagtaaatgcccattctcctctgaccagtattatttcctcgagctcttcctgcttttacttgaatcttgcagctgtcgtacacctctgctatattcaaaagcagcatttgagtctgaaatgtaaaaaacaaaaaacaaaaaaacaaaaaaagcagtatctttatattcttcacatgtaatttttcatacctgcattttaaaactgtttctgttgatctggttttgtcaagaatcttttagaactgtgctcttaatgtacctgcacatgtgatatgtgaacaggaatttgcatgtgtaacctgtgtttatccgtagtttttgttatttactgcttatttgtgaattcaggttactaaagtgatttaccaataaacaaagctaggcaacagtaacttgtacagatgtttggcatgttaaccattgtgtttactgagctcttgaatcccttgttcatgatagcacactgaaactgcagctgtcctgaaattgcatgttttaactcctgtgatttagaagcttactaaataacttctttctcttttctaaaacttcttccatttccaaacaaattaaaatattacttgttaaaacactggtaggtatattctgctgacagttttatttcttaactttaatgatattctcatcaaagctaaagttcaggccacaccatgttcatatgggcaaaatgactcggggtggttatttcaacccaaaactcctgaccagtggggattcttcagtgctgagaataaattttttcaaatgtaggaggcagaaccctgatgaagttggtttacttaagtaaatgcacctagcggatacgatggtgtactttgtgaaattaaaatctcgatagcttgtctcct

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