LOCUS       NM_001400480            4774 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus matrin 3 (MATR3), transcript variant 6, mRNA.
ACCESSION   NM_001400480
VERSION     NM_001400480.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 4774)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 4774)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4774)
  AUTHORS   Hisada-Ishii S, Ebihara M, Kobayashi N and Kitagawa Y.
  TITLE     Bipartite nuclear localization signal of matrin 3 is essential for
            vertebrate cells
  JOURNAL   Biochem Biophys Res Commun 354 (1), 72-76 (2007)
   PUBMED   17223080
  REMARK    GeneRIF: Exogenous cmatr3 rescued the HeLa cells where human matrin
            3 was suppressed by RNA interference, but cmatr3 containing
            deletions at either of the basic amino acid clusters or the linker
            could not.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000256.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267661.26870.1 [ECO:0000332]
            RNAseq introns              :: partial sample support
                                           SAMEA103992290, SAMEA103992323
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                JAENSK010000256.1  717916-717998       c
            84-360              JAENSK010000256.1  714385-714661       c
            361-1439            JAENSK010000256.1  709460-710538       c
            1440-1501           JAENSK010000256.1  704700-704761       c
            1502-1543           JAENSK010000256.1  703999-704040       c
            1544-1647           JAENSK010000256.1  703580-703683       c
            1648-1700           JAENSK010000256.1  702510-702562       c
            1701-1826           JAENSK010000256.1  701914-702039       c
            1827-1952           JAENSK010000256.1  701185-701310       c
            1953-2123           JAENSK010000256.1  700806-700976       c
            2124-2255           JAENSK010000256.1  699534-699665       c
            2256-2299           JAENSK010000256.1  698540-698583       c
            2300-2690           JAENSK010000256.1  697688-698078       c
            2691-3084           JAENSK010000256.1  695787-696180       c
            3085-3206           JAENSK010000256.1  695071-695192       c
            3207-4774           JAENSK010000256.1  691941-693508       c
FEATURES             Location/Qualifiers
     source          1..4774
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="13"
                     /map="13"
     gene            1..4774
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="matrin 3"
                     /db_xref="CGNC:1772"
                     /db_xref="GeneID:373948"
     exon            1..83
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            84..360
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            361..1439
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    528..530
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="upstream in-frame stop codon"
     CDS             549..3257
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="isoform 1 is encoded by transcript variant 6"
                     /codon_start=1
                     /product="matrin-3 isoform 1"
                     /protein_id="NP_001387409.1"
                     /db_xref="CGNC:1772"
                     /db_xref="GeneID:373948"
                     /translation="

MSKSFQQSSLSRDSQGHGRELSAGIGLLAAATQSLNMPASLGRMNQGTARLASLMNLGMSSSLNQQGSHSALSSGSTSSHNLQSIFNIGSRGPLPLSSQHRGDADQATNILASFGLSARDLDELSRYPEDKITPENLPQILLQLKRRRAEEGYGRDGRSSTREPPYRVPRDDWEEKRHFRRDSFDDRGPSLNPVVDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDESFYGETSHNYHKFDSEYDRMGRGPGPERSLFEKKRGAPPNSNIEDFHGFLPKGYPHLCSICDMPVHSNKEWNHHINGATHGRRCQLLLEIYPEWNPDSDSGHGMGDPFMLQQSTNPAPGILGPPPPPFHLGGPPVGPRGAGNGNMQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGIITNHLILNKINEAFIEMSTTEDAQAAVEYYSTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKTEAPKPELGRVIHLSNLPHSGYSDNAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDALAMVEHCANKALWFQGRCVKVDLSEKYKKLVLRIPNKGVELLKKDKTRKRTYSPDSKDSPSDKKSKTDATQKPESGTVEDKAKEEKQDDTAEPSGTKSSEQADQDEPSLLLESEDELLVDEEEAAALLESGSSAGDDADVANLTDVTTEEKKDPADDVTVKTEGNVVANPATKKKLKKRYVGGFPRSMEGFVTLDEVGDEEDSDHQKLRKSGLAVKPAGKNDDSLAEIKVDKIEEPEQENETLENGTKTEDNLKAEAVEASDTTAAQDPEKNAHENIDTQDEQETKSVQEKALIPDEFRIGPYQPNVPVGVNYVVPKTGFYCKLCSLFYTNEDVAKKTHCSSLPHYQKLKKILDKMAEDYRQKKEA"

     misc_feature    1389..1493
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="U1-like zinc finger; Region: ZnF_U1; smart00451"
                     /db_xref="CDD:197732"
     misc_feature    1710..1937
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="RNA recognition motif 1 (RRM1) found in vertebrate
                     matrin-3; Region: RRM1_MATR3; cd12714"
                     /db_xref="CDD:410113"
     misc_feature    2007..2246
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="RNA recognition motif 2 (RRM2) found in vertebrate
                     matrin-3; Region: RRM2_MATR3; cd12715"
                     /db_xref="CDD:410114"
     misc_feature    <2283..3029
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904;
                     TIGR00927"
                     /db_xref="CDD:273344"
     misc_feature    3105..3209
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /note="U1-like zinc finger; Region: ZnF_U1; smart00451"
                     /db_xref="CDD:197732"
     exon            1440..1501
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1502..1543
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1544..1647
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..1700
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1701..1826
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1827..1952
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1953..2123
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2124..2255
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2256..2299
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2300..2690
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2691..3084
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            3085..3206
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
     exon            3207..4774
                     /gene="MATR3"
                     /gene_synonym="matrin-3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tccctcagcccggccacatccccacaggcggagcggggcggccggcgccggcgagcggagcggagcagcggggcggccgccggataacccttcgtgccgtggtgtgttgtaaacggttttgctgagaaacttatgacttcttccatggcagagtaggttgctgcaaaacaaatggctgcactgtgaataacacccgaaggagaggaaaaatctgcacgtcttgctctgaaaagtggggctttcagaggggaaactttatttgagactttcgtttcaaagctgcgcagtcttcaaaagtctcttattgctgcaaactgagggtgtgctttttcagcttctgaactgcttcatggcttcattaattgtctggtgtttctcagcttgaagaagatctgcagtcattattgatcctctttcttggcgttaccattttcgaagtgaagtttgcctagctttctagtgcgagctttcttttcagccatcttaaaccaaaccaaacaaacaaacaaagattttgatccgtaaagtagacaagctatagttctacaatgtccaagtcattccagcagtcatctctgagtagggattcacaaggtcatgggcgtgagctctctgcaggaataggccttcttgctgctgctacccagtctttaaatatgccagcatctcttggaaggatgaaccagggtactgcacgccttgctagcttaatgaatcttggaatgagttcttcattgaaccaacaaggatctcatagtgcactgtcttctggtagtacctcttcccataatttgcagtctatatttaacattggaagtagaggtccgctccctttgtcttctcagcaccgtggagatgcagaccaggccactaatattttggccagctttggtctgtctgctagagacttagatgaactgagtcgctatcccgaggacaagattactcctgaaaacttgcctcagatccttctacaacttaaaaggaggagagctgaagaaggttatggtagagatggcagatcatccacacgggaaccaccgtacagagtacctagggatgattgggaagaaaaaaggcattttagaagagatagctttgatgatcgtggtcctagtctcaacccggtagttgactatgaccatggaagtcgttctcaagaatctggttattatgacagaatggattatgaagatgacagattgagagatggagaaaggtgtagggatgaatctttctatggtgagacttcgcataactatcataaatttgacagtgagtatgacagaatgggtcgtggccctggtcccgagagatctctctttgagaaaaagagaggtgctcctccaaatagcaatattgaagacttccatggattcttaccgaagggttatccccatctgtgctctatatgtgatatgccagttcattctaataaggagtggaatcaccatatcaatggagcgactcatggccgacgctgtcagctgctgcttgaaatatatccagaatggaaccctgacagtgattcaggacatggaatgggcgatccctttatgttgcagcagtccacaaaccctgcaccaggaattctgggacccccaccacctccattccacctgggagggcctcctgttgggccaagaggagctggaaatggcaacatgcaaggaccgagacacatgcagaagggcagagtggaaacaagcagagttgttcacatcatggatttccagagagggaagaacttgagatatcaattgcttcagcttgttgaaccatttggaataattacaaatcacttgattctaaacaaaatcaatgaggcatttattgaaatgtcaaccactgaagacgctcaggctgcagtagagtactattcaacaacacctgcactggtatttggtaaaccagtcagagtccacctgtcgcagaaatacaaaaggataaagaaacctgaaggtaaacctgaccaaaaaacagaggcaccaaaaccagaacttggtcgtgtgattcacctcagcaatttacctcattcggggtactctgataacgccgtgctcaagctggctgaaccatatggaaaaattaagaactacatactcatgaggatgaagagccaggctttcattgaaatggagaccagagaagatgctctagccatggttgaacattgtgccaacaaagctctttggttccaaggcagatgtgtgaaagtggatctatctgaaaaatacaagaaattggtgttgaggattccaaacaaaggagttgaacttctgaaaaaggataaaactagaaagagaacatattctccagacagtaaagactctccaagtgataagaagtctaagactgatgctactcagaagcctgaaagtggcactgtagaagataaagcaaaagaggagaagcaagatgatactgctgagccatcgggcactaaaagcagcgagcaggcagaccaagatgagcctagtttactccttgaatctgaagatgagctcctagtggatgaggaggaagcagcagcactgctggaaagtggcagctcagcaggagatgatgcagatgttgccaatttaactgatgtgactactgaagaaaaaaaggacccagctgatgatgtgaccgtaaaaaccgagggaaatgttgtggccaatccagcaacaaagaaaaaacttaaaaagcgatacgtgggtggctttccacggagcatggaaggctttgtcactctagatgaggttggtgatgaagaagactcagatcatcagaaacttcggaagtcgggtttggcagtaaaacctgctggcaaaaatgatgatagtttggcagaaatcaaagtagacaagattgaggagccagagcaggaaaatgaaacgttagaaaatggtaccaagactgaagataatctgaaggctgaagctgttgaagcttccgacaccacagcagcacaagatcctgagaaaaatgcccatgaaaatatagacacccaggatgaacaggaaacaaagagtgtccaagagaaagctcttattccagatgaatttaggattgggccataccagccaaatgttcctgttggtgtgaattatgtggtacccaaaacagggttttattgcaaattgtgttccctgttctacacaaatgaagatgttgcaaaaaagacccattgcagcagccttcctcattatcaaaagttgaagaaaattctggataaaatggcagaagactacaggcaaaagaaagaagcataaaaagaaggatggatgtaaggaaaacagtggctttgttcttattgttaatctttttttaaaagcagtacaagtagtagatggaaatactgtattctttttttttttgttttagtgagatacggtagatgttataggtctgttcatgtgttcagtgttgtagcaaaaagcataagcagttaagttaatgaaaaaaatttgttcttcatgtgggaatggcaacaagttttcgttttgacactgagctattaaagaaaaaatcttgcatccttgtggaacgctcgtctatggcaagaaaattttcttgaagtgaaatttactactttcaagcttcgaaaattcgcctatccattctcaataaaaaataaaaagtaacactgtatttttatttcatctagaacattccgtatttcagtctgagcctagcagatacctaatttggagtgtgaggctgtcattgcatttcacttttgaaaagtctttaaatgtaagttgcatttttaaatgttgaattgcagtttcttttaatgtcattgttgttatatagcaaataggaaaattagtgattagtcagctttacaactttgtgattttttttcctaagctcttgatagactttcctattcagctataccttgtatttttagtgagaagtaaatgcccattctcctctgaccagtattatttcctcgagctcttcctgcttttacttgaatcttgcagctgtcgtacacctctgctatattcaaaagcagcatttgagtctgaaatgtaaaaaacaaaaaacaaaaaaacaaaaaaagcagtatctttatattcttcacatgtaatttttcatacctgcattttaaaactgtttctgttgatctggttttgtcaagaatcttttagaactgtgctcttaatgtacctgcacatgtgatatgtgaacaggaatttgcatgtgtaacctgtgtttatccgtagtttttgttatttactgcttatttgtgaattcaggttactaaagtgatttaccaataaacaaagctaggcaacagtaacttgtacagatgtttggcatgttaaccattgtgtttactgagctcttgaatcccttgttcatgatagcacactgaaactgcagctgtcctgaaattgcatgttttaactcctgtgatttagaagcttactaaataacttctttctcttttctaaaacttcttccatttccaaacaaattaaaatattacttgttaaaacactggtaggtatattctgctgacagttttatttcttaactttaatgatattctcatcaaagctaaagttcaggccacaccatgttcatatgggcaaaatgactcggggtggttatttcaacccaaaactcctgaccagtggggattcttcagtgctgagaataaattttttcaaatgtaggaggcagaaccctgatgaagttggtttacttaagtaaatgcacctagcggatacgatggtgtactttgtgaaattaaaatctcgatagcttgtctcct

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