2024-05-03 01:59:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001398379 6760 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus PLAG1 zinc finger (PLAG1), transcript variant 5, mRNA. ACCESSION NM_001398379 VERSION NM_001398379.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 6760) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 6760) AUTHORS Pajer P, Pecenka V, Kralova J, Karafiat V, Prukova D, Zemanova Z, Kodet R and Dvorak M. TITLE Identification of potential human oncogenes by mapping the common viral integration sites in avian nephroblastoma JOURNAL Cancer Res 66 (1), 78-86 (2006) PUBMED 16397219 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000043.1. ##Evidence-Data-START## Transcript exon combination :: SRR13267648.8319.1, SRR13267649.190555.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-183 JAENSK010000043.1 13856148-13856330 c 184-283 JAENSK010000043.1 13815738-13815837 c 284-6760 JAENSK010000043.1 13804586-13811062 c FEATURES Location/Qualifiers source 1..6760 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="2" /map="2" gene 1..6760 /gene="PLAG1" /note="PLAG1 zinc finger" /db_xref="CGNC:53668" /db_xref="GeneID:429484" exon 1..183 /gene="PLAG1" /inference="alignment:Splign:2.1.0" exon 184..283 /gene="PLAG1" /inference="alignment:Splign:2.1.0" misc_feature 267..269 /gene="PLAG1" /note="upstream in-frame stop codon" exon 284..6760 /gene="PLAG1" /inference="alignment:Splign:2.1.0" CDS 288..1547 /gene="PLAG1" /note="isoform b is encoded by transcript variant 5; zinc finger protein PLAG1; pleiomorphic adenoma gene 1 protein" /codon_start=1 /product="zinc finger protein PLAG1 isoform b" /protein_id="NP_001385308.1" /db_xref="CGNC:53668" /db_xref="GeneID:429484" /translation="
MATHSPEKTHKCNYCEKMFHRKDHLKNHLHTHNPNKEAFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKTHAGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPMDLLDPFTCNVSVPIKDELLPVMSLPSSELTSKPFTNTLQLNLYNTQIQSMQSSASAHQMVATSLPLGMPCPIDMESVHPSHQLSLKYPLSSTSYAVSMPEKEQPLKGEIESYLMELQSGMPSSSQDSQASSSKLGLDPQVGPLDDGSGEVSLSKGSVPISEPLNTPSLDFSQLFNFIPVNGPPYNPSVSVGNLGMSYTQEEAHSSMTQLPPQTQDPQDPSNSIGLGSLHSLSAAFTSSLSTTTTLPRFHQAFQ"
misc_feature 315..>461 /gene="PLAG1" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 315..383 /gene="PLAG1" /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096" /db_xref="CDD:395048" misc_feature 321..398 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 321..383 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(336..338,366..368,387..389,393..395,405..407, 426..428) /gene="PLAG1" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 408..461 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 495..557 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(510..512,516..518,522..524,528..533,540..545, 552..554,615..617,621..623,633..638,645..650,657..659, 699..701,705..707,711..713,717..722,729..734) /gene="PLAG1" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 600..662 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 684..740 /gene="PLAG1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
gtgtgcggcaggctgggctgcaccgcagcgcatacactacaatggctgctggaaggacgggaaagcaaacaatttccaggcccgccgcgtccagcccgaaatatggggaaaaaattacagaaaaatcggagaacactgtaaagggtggaaacggggcgcagaggggatgctgaggctcccgcgaccagtaaaaatgggaagtactggattctggtttcctccaagaagagtcagcggaactggttaagaccaaaatctgaggactttagtgggcaaacatcaggcatatggctactcattctcctgagaaaacccacaagtgtaattattgtgagaaaatgtttcaccgaaaagatcacctaaagaatcacctacatacacacaatcccaacaaagaggcctttaagtgtgaagaatgtggaaagaactacaataccaagcttgggttcaaacgtcacctggctttgcacgctgcaacaagcggtgacctcacctgtaaggtatgtttgcagacttttgaaagcacaggagtgctgctggagcacctaaaaactcatgcaggcaagtcatcgggtggagtgaaggagaaaaaacaccagtgtgaacactgtgatcgtcggttctacacccgaaaggatgtccgtagacacatggtagtgcacactggaagaaaggacttcctctgtcagtactgtgcacagagatttgggcgtaaggatcacctaacgcgccacatgaagaaaagtcacaaccaagaacttttgaaggtcaaaacagagccaatggaccttctagatccctttacctgcaacgtttctgtgcctatcaaggatgagctgcttccagtgatgtcgttaccttccagtgaactgacatcaaagccatttacaaacactttgcaattaaatctctacaacactcagattcagtccatgcagagttctgcatctgcacaccaaatggttgccacgtcgttaccattgggaatgccttgtccaatagatatggagtctgtccacccttcgcaccagctatcattgaaatatccgctcagttctacctcatacgcagtttctatgcctgaaaaagaacagcctttgaaaggggaaatcgaaagttacttaatggagttgcaaagtggtatgccttcttcgtcccaggattctcaagcatcttcatcaaaactagggctggatccacaagtagggccgctagatgatgggtctggggaggtttccctttccaagggctctgttcctattagtgaacctctaaacaccccgtcattggacttttctcagctgttcaacttcatacccgtcaacggccctccctataacccttctgtttcagtgggaaaccttggaatgagttatacgcaggaggaggcacattcttctatgactcaacttccaccacagacacaggatccacaagatcctagcaatagtataggtcttgggtctctgcactcgttgtcagcagctttcacgagcagtctaagcacaaccaccaccctaccacgatttcatcaagctttccaataggatgtacaaagctggcttgttactgtctatttgtagaaatgccttaggtgaccatttttaacttagtgcctactataagacattatcagttctctgcttttgtacagtaccaatctcatgaagccagtaagaaatttaaatctttaaaaatgttttggaagtgtttattctcagctgtgtttacttcattgtttttttgtttttgtttttttttttaagtctcattgtattgttttcattttcactgccaattgacacatttaaaatgtccactagaaaggcatcccaagcaaactttcaacacgcatcccttttttaaaaaccttttcaaccttacagccacttctgttctgttgatgtcagtggtggaactaccatttttaccttttatatattacagcatttgcaaaggatccagttcaaacgtgtatcacaaaggttcctgaagattcgggaaaaaagtttctccggtccctttccaaaaaaaccctcttcccaaatggtgacatctgatctgttctataatgacaaattgtaatttttaaataaaggtagaattcagatttttctgaaaatttggatgtgtatatatagaagtccatatatacacatgtacatatatataacgttttgacttatattgaagtcattataaaaggtgttaggaattttgccattttctggcttaaatctttgtggcttgttatgaatattggaagaaaaaaaatacagtttaattttctaaaatcatggctgaacagaacttcaacagagaatctctgcttgcctaactgacaaaagtttcaagttgaatttggaactgtgttgtgctttcatgactctggtagaggaaaacaggcaaatttaatggctgatcttgaaatataaaagtgttgtaatttagtaatgcagaatattttgtcgcagtttttgttttgattcttaacttgctgtttttttctctttagtagcatagaaagagtactgcataggaatcttccaatagtgtactgacatttgtaggcatcggtcttctcccagctgccaccaccaaagggtggatcaagtccagccagaaagtgtgtatctattttcagttcaatattagtgtgcggtcagagagtgaatgtaaatttacaaataccatttttggggctttttttttttttttttttctattggaatgaacttttcagctgtgttacatggtgtgttatgtcctcctaagcaacaagttagatgttaatcatactttctacacctgggtacttggttagggactttttgcccactgccaagatttaaagacaggactcttaggagtgaagtaaaagcatattgcttacaccacttttgcctaatgcaatattttctattccccaacccctaataaccaaaagaggaaaaaaggaaaaaaaaacaaaaacaaaaacaaacctgtgatgcatgaaagcaaactcgagttgctgtaattcaacaataacacgcttttccttgtcatttttgtacaaggaattaaaaaatagaaatcgagtacatttgtatctctcaaacaataatgaggattcatacgaggttttaagtggttaaactaaatatacttcacagaaacaaaagttgctcccatttaaggagctcgtgctccagatgttttatcagtagctcctacttttttttaattctaggagcaatatgcaggtgtagttttactattttatacatatatgtatttaaattttattactgaaagataacatttttataaatgtgtttgtgttccaaaggcattaaaataaggatgtattgataaggaaaataccttttgaaattctacaaactgctcctaaatgttgggtttaggagctcgttatctcaaagtgggcttttagctctgcttcatgactgcttcctctggtttctatgaaacagatcgcttgcttacttacatctttagttgaatgattcgttcaatattgctttttttttttttcttctttttctcatcacctttataaaggaaagaaaaacacaggtgaacagagcacaaggtgaacgccacagaatgtatttctggttaaaaatcagcaaccacaatgcacatagggacaacttggctttcctctgagtcttttcaggcaatttgggatgaagagcaacggcctcccttgctcctgtgagctctgatccacgtgaagcagagcccagcagctccccgtgagcggagggatgccgtgacgctcggctctggcagcggctgcggagtggataggccgcgctcttcttcctggcgatgatgcacacaggccttgggagcttcagctctgtgagcaatttttggatggcctggaggaagttccttggtcgagtgtcacaaataagttcagactcctctgccgctgccagatgcttggccaggctgctcgctgaggggacttgatgtggcacatgtaccgctcggcgcagggcagtgccacctgcttatcaggcccagctgccgatcagactcgattaaaaaaacccaacaaacgcttggccaacacccagttcttagtacttagccggagaccttactacttggttagtgccttagcttcctgagaaggggttgacatttcactttggagatagacgtacatttcagtggaggagcagggacctcagacaaggtattgaacctcattcagtcagggctgcggccggcggctgcactcggcctgtgccgctgagctaggatgtaggacggtgtggaagcagatgtgacactgtaagcaatattaacacattagtgcttttggatatcatttaggcagagtcagtattggccactactaaaacgtcacgttttaaaccctgttttctaggtttcagattggttctttgagggaggggggagggctggctgatcgtgcaccactctttgtgcaacttcgagacttctagtgaggtttgttgggttttttttttgtttgttttttcttttttttttttttctgttccgttctgtttgggttttgttgtgttttttttttttttttttaaatatatatatttttgtgtacttgttgcttgtgcttaatttagtagtaaattgtggaatagagtgatttattgttaatttggcagtagcggttttttaaaaccatatactgactgaaacatgagccagagctgattgctttattaagctaataatgaatgttaagagtacatattttcaggatcatttgcctagtgagctaaacatgtattataggccaatattttttaaaataaagcttggtcaacctctatgttacacatattacaagatatagcactttcaaaagaaaacctaaaccttttaagaaagtttcttacaggttatgctttttattataaaaccttttattataatttgtttcaagtgccattagattacatatatgtaggcctttggtataatgctttgtgtacaaaatggtagacattgtaattttaaacaggtacatttttacagtgttttcttatcaatttgctatattgcacagaaccagtgtgtctttcttaagggttttacaatggtttttactaggtttacacgtttcaaactacactgtcttctactgccattttgaataccagtcaaaaaaaaaaaaaaaaaaagaaaaagaaaaggaaaaagaaagagtttgtcctcaccaattgtaatttgtgtcctctggagttctgggtggtaactattgcaaaaatatttaacacgcagtatttgatgcagatgttttttttttatcatatgctctcaacactatgctgctgtctgaagttaacttagggcctgatcctgcatccgtaaacgtcaaggggagcagggctgcatccttcgttatgtctgtctcatacactggtttagcagctcatcctgtattcttctcagtctatagataagcctccaaagtaaatgtacttacctggtatgtagtaaactgtatagacttagctgcccattctgcatcttcccagtgtacaattaaaaccataggcattagcattacactcagcgtacaaacaatgccacagtagttcaaaatgtgtttggatagtcccaaagctttatgtaataagggtgtcttactttgttggaaggcagtgtcttttgataacagttatctagccctggaagtgacacagaactattgctaatcatatgtaaacacttttcagtataagcttcagtggtacagtcgaaccagagtgaatgtttatctcctcagaaacactcctgcaatattgttatattggatcatgctgctaatgtaacttgggatacaactcctctcatggtgctacaaacctccctgtctcattcagatgtatttttacccatagaaaaaaggactatactagacctatagttgtatgatatatttttatactgtgacttaatttgtcattaatgaactttgtacaacaccacaatgtattcatatgcacttgcagaagtaaaatgtcggacatgcaaatggaaacgctgacaagcccagctcttgttcacagaaacaggtggtttagttaaaattcattgcgggctttttatatggtgtggagtgaagaacctactatatattactaaaagcttctgaatttagacaaaaactgggaaagagtatattggggaatgatgacacacccaaacctgactcggattgctgaaattctattttttagctagtgggaaaattgttcggactcgaatgctaaaatgttttaatgataaaattttttttgagtcaaaaatagagaaaaaaaaaagaacacagaaaaccctgcattccagacagaatttgtgtatgtttcttgcatttaaaatttgctatcctgtgatatgggaaattgagttgcttatcatgtatatgtactttaaaatgtattcacaaactactgttgtatttgtataaaatatagacaaaaagattgcgtatatatttttgtgtataagctctgtaaaatagcaatcacattatgaagctgcagcagaacttcattttaaacattcacatccaaagaaacagactatttattgtccacataccctgattataaaatataccttgctgctattaaacaatagtgctgcagcttcttgtggcctacagtgttatgtttgctgtacaaaaatatgtgaactccacaaaatatatcaataaaattacagaatggttttagttaatgaataa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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