LOCUS       NM_001398378            6983 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus PLAG1 zinc finger (PLAG1), transcript variant 4,
            mRNA.
ACCESSION   NM_001398378
VERSION     NM_001398378.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 6983)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 6983)
  AUTHORS   Pajer P, Pecenka V, Kralova J, Karafiat V, Prukova D, Zemanova Z,
            Kodet R and Dvorak M.
  TITLE     Identification of potential human oncogenes by mapping the common
            viral integration sites in avian nephroblastoma
  JOURNAL   Cancer Res 66 (1), 78-86 (2006)
   PUBMED   16397219
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000043.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267661.4263.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992393, SAMEA103992415
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-183               JAENSK010000043.1  13856148-13856330   c
            184-406             JAENSK010000043.1  13827344-13827566   c
            407-506             JAENSK010000043.1  13815738-13815837   c
            507-6983            JAENSK010000043.1  13804586-13811062   c
FEATURES             Location/Qualifiers
     source          1..6983
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
     gene            1..6983
                     /gene="PLAG1"
                     /note="PLAG1 zinc finger"
                     /db_xref="CGNC:53668"
                     /db_xref="GeneID:429484"
     exon            1..183
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
     exon            184..406
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
     exon            407..506
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    490..492
                     /gene="PLAG1"
                     /note="upstream in-frame stop codon"
     exon            507..6983
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
     CDS             511..1770
                     /gene="PLAG1"
                     /note="isoform b is encoded by transcript variant 4; zinc
                     finger protein PLAG1; pleiomorphic adenoma gene 1 protein"
                     /codon_start=1
                     /product="zinc finger protein PLAG1 isoform b"
                     /protein_id="NP_001385307.1"
                     /db_xref="CGNC:53668"
                     /db_xref="GeneID:429484"
                     /translation="

MATHSPEKTHKCNYCEKMFHRKDHLKNHLHTHNPNKEAFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKTHAGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPMDLLDPFTCNVSVPIKDELLPVMSLPSSELTSKPFTNTLQLNLYNTQIQSMQSSASAHQMVATSLPLGMPCPIDMESVHPSHQLSLKYPLSSTSYAVSMPEKEQPLKGEIESYLMELQSGMPSSSQDSQASSSKLGLDPQVGPLDDGSGEVSLSKGSVPISEPLNTPSLDFSQLFNFIPVNGPPYNPSVSVGNLGMSYTQEEAHSSMTQLPPQTQDPQDPSNSIGLGSLHSLSAAFTSSLSTTTTLPRFHQAFQ"

     misc_feature    538..>684
                     /gene="PLAG1"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
                     cd20908"
                     /db_xref="CDD:411020"
     misc_feature    538..606
                     /gene="PLAG1"
                     /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
                     /db_xref="CDD:395048"
     misc_feature    544..621
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:411020"
     misc_feature    544..606
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(559..561,589..591,610..612,616..618,628..630,
                     649..651)
                     /gene="PLAG1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:411020"
     misc_feature    631..684
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:411020"
     misc_feature    718..780
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(733..735,739..741,745..747,751..756,763..768,
                     775..777,838..840,844..846,856..861,868..873,880..882,
                     922..924,928..930,934..936,940..945,952..957)
                     /gene="PLAG1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    823..885
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    907..963
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      

gtgtgcggcaggctgggctgcaccgcagcgcatacactacaatggctgctggaaggacgggaaagcaaacaatttccaggcccgccgcgtccagcccgaaatatggggaaaaaattacagaaaaatcggagaacactgtaaagggtggaaacggggcgcagaggggatgctgaggctcccgcgcacataaaaagctgcagcccgtatgaagaggggaattattagctaaaagatagccgtcagatttcggaagataaatgaaaggtggatctgaaccttgaaattgtcagctcagcaggaggttgcaaaggcagagtggtgaaaagagggtctcctgcagaactcccaagaagattgaaatggattgtgcaattctggaaggggacaagaaacgggcaatacaaagaccagtaaaaatgggaagtactggattctggtttcctccaagaagagtcagcggaactggttaagaccaaaatctgaggactttagtgggcaaacatcaggcatatggctactcattctcctgagaaaacccacaagtgtaattattgtgagaaaatgtttcaccgaaaagatcacctaaagaatcacctacatacacacaatcccaacaaagaggcctttaagtgtgaagaatgtggaaagaactacaataccaagcttgggttcaaacgtcacctggctttgcacgctgcaacaagcggtgacctcacctgtaaggtatgtttgcagacttttgaaagcacaggagtgctgctggagcacctaaaaactcatgcaggcaagtcatcgggtggagtgaaggagaaaaaacaccagtgtgaacactgtgatcgtcggttctacacccgaaaggatgtccgtagacacatggtagtgcacactggaagaaaggacttcctctgtcagtactgtgcacagagatttgggcgtaaggatcacctaacgcgccacatgaagaaaagtcacaaccaagaacttttgaaggtcaaaacagagccaatggaccttctagatccctttacctgcaacgtttctgtgcctatcaaggatgagctgcttccagtgatgtcgttaccttccagtgaactgacatcaaagccatttacaaacactttgcaattaaatctctacaacactcagattcagtccatgcagagttctgcatctgcacaccaaatggttgccacgtcgttaccattgggaatgccttgtccaatagatatggagtctgtccacccttcgcaccagctatcattgaaatatccgctcagttctacctcatacgcagtttctatgcctgaaaaagaacagcctttgaaaggggaaatcgaaagttacttaatggagttgcaaagtggtatgccttcttcgtcccaggattctcaagcatcttcatcaaaactagggctggatccacaagtagggccgctagatgatgggtctggggaggtttccctttccaagggctctgttcctattagtgaacctctaaacaccccgtcattggacttttctcagctgttcaacttcatacccgtcaacggccctccctataacccttctgtttcagtgggaaaccttggaatgagttatacgcaggaggaggcacattcttctatgactcaacttccaccacagacacaggatccacaagatcctagcaatagtataggtcttgggtctctgcactcgttgtcagcagctttcacgagcagtctaagcacaaccaccaccctaccacgatttcatcaagctttccaataggatgtacaaagctggcttgttactgtctatttgtagaaatgccttaggtgaccatttttaacttagtgcctactataagacattatcagttctctgcttttgtacagtaccaatctcatgaagccagtaagaaatttaaatctttaaaaatgttttggaagtgtttattctcagctgtgtttacttcattgtttttttgtttttgtttttttttttaagtctcattgtattgttttcattttcactgccaattgacacatttaaaatgtccactagaaaggcatcccaagcaaactttcaacacgcatcccttttttaaaaaccttttcaaccttacagccacttctgttctgttgatgtcagtggtggaactaccatttttaccttttatatattacagcatttgcaaaggatccagttcaaacgtgtatcacaaaggttcctgaagattcgggaaaaaagtttctccggtccctttccaaaaaaaccctcttcccaaatggtgacatctgatctgttctataatgacaaattgtaatttttaaataaaggtagaattcagatttttctgaaaatttggatgtgtatatatagaagtccatatatacacatgtacatatatataacgttttgacttatattgaagtcattataaaaggtgttaggaattttgccattttctggcttaaatctttgtggcttgttatgaatattggaagaaaaaaaatacagtttaattttctaaaatcatggctgaacagaacttcaacagagaatctctgcttgcctaactgacaaaagtttcaagttgaatttggaactgtgttgtgctttcatgactctggtagaggaaaacaggcaaatttaatggctgatcttgaaatataaaagtgttgtaatttagtaatgcagaatattttgtcgcagtttttgttttgattcttaacttgctgtttttttctctttagtagcatagaaagagtactgcataggaatcttccaatagtgtactgacatttgtaggcatcggtcttctcccagctgccaccaccaaagggtggatcaagtccagccagaaagtgtgtatctattttcagttcaatattagtgtgcggtcagagagtgaatgtaaatttacaaataccatttttggggctttttttttttttttttttctattggaatgaacttttcagctgtgttacatggtgtgttatgtcctcctaagcaacaagttagatgttaatcatactttctacacctgggtacttggttagggactttttgcccactgccaagatttaaagacaggactcttaggagtgaagtaaaagcatattgcttacaccacttttgcctaatgcaatattttctattccccaacccctaataaccaaaagaggaaaaaaggaaaaaaaaacaaaaacaaaaacaaacctgtgatgcatgaaagcaaactcgagttgctgtaattcaacaataacacgcttttccttgtcatttttgtacaaggaattaaaaaatagaaatcgagtacatttgtatctctcaaacaataatgaggattcatacgaggttttaagtggttaaactaaatatacttcacagaaacaaaagttgctcccatttaaggagctcgtgctccagatgttttatcagtagctcctacttttttttaattctaggagcaatatgcaggtgtagttttactattttatacatatatgtatttaaattttattactgaaagataacatttttataaatgtgtttgtgttccaaaggcattaaaataaggatgtattgataaggaaaataccttttgaaattctacaaactgctcctaaatgttgggtttaggagctcgttatctcaaagtgggcttttagctctgcttcatgactgcttcctctggtttctatgaaacagatcgcttgcttacttacatctttagttgaatgattcgttcaatattgctttttttttttttcttctttttctcatcacctttataaaggaaagaaaaacacaggtgaacagagcacaaggtgaacgccacagaatgtatttctggttaaaaatcagcaaccacaatgcacatagggacaacttggctttcctctgagtcttttcaggcaatttgggatgaagagcaacggcctcccttgctcctgtgagctctgatccacgtgaagcagagcccagcagctccccgtgagcggagggatgccgtgacgctcggctctggcagcggctgcggagtggataggccgcgctcttcttcctggcgatgatgcacacaggccttgggagcttcagctctgtgagcaatttttggatggcctggaggaagttccttggtcgagtgtcacaaataagttcagactcctctgccgctgccagatgcttggccaggctgctcgctgaggggacttgatgtggcacatgtaccgctcggcgcagggcagtgccacctgcttatcaggcccagctgccgatcagactcgattaaaaaaacccaacaaacgcttggccaacacccagttcttagtacttagccggagaccttactacttggttagtgccttagcttcctgagaaggggttgacatttcactttggagatagacgtacatttcagtggaggagcagggacctcagacaaggtattgaacctcattcagtcagggctgcggccggcggctgcactcggcctgtgccgctgagctaggatgtaggacggtgtggaagcagatgtgacactgtaagcaatattaacacattagtgcttttggatatcatttaggcagagtcagtattggccactactaaaacgtcacgttttaaaccctgttttctaggtttcagattggttctttgagggaggggggagggctggctgatcgtgcaccactctttgtgcaacttcgagacttctagtgaggtttgttgggttttttttttgtttgttttttcttttttttttttttctgttccgttctgtttgggttttgttgtgttttttttttttttttttaaatatatatatttttgtgtacttgttgcttgtgcttaatttagtagtaaattgtggaatagagtgatttattgttaatttggcagtagcggttttttaaaaccatatactgactgaaacatgagccagagctgattgctttattaagctaataatgaatgttaagagtacatattttcaggatcatttgcctagtgagctaaacatgtattataggccaatattttttaaaataaagcttggtcaacctctatgttacacatattacaagatatagcactttcaaaagaaaacctaaaccttttaagaaagtttcttacaggttatgctttttattataaaaccttttattataatttgtttcaagtgccattagattacatatatgtaggcctttggtataatgctttgtgtacaaaatggtagacattgtaattttaaacaggtacatttttacagtgttttcttatcaatttgctatattgcacagaaccagtgtgtctttcttaagggttttacaatggtttttactaggtttacacgtttcaaactacactgtcttctactgccattttgaataccagtcaaaaaaaaaaaaaaaaaaagaaaaagaaaaggaaaaagaaagagtttgtcctcaccaattgtaatttgtgtcctctggagttctgggtggtaactattgcaaaaatatttaacacgcagtatttgatgcagatgttttttttttatcatatgctctcaacactatgctgctgtctgaagttaacttagggcctgatcctgcatccgtaaacgtcaaggggagcagggctgcatccttcgttatgtctgtctcatacactggtttagcagctcatcctgtattcttctcagtctatagataagcctccaaagtaaatgtacttacctggtatgtagtaaactgtatagacttagctgcccattctgcatcttcccagtgtacaattaaaaccataggcattagcattacactcagcgtacaaacaatgccacagtagttcaaaatgtgtttggatagtcccaaagctttatgtaataagggtgtcttactttgttggaaggcagtgtcttttgataacagttatctagccctggaagtgacacagaactattgctaatcatatgtaaacacttttcagtataagcttcagtggtacagtcgaaccagagtgaatgtttatctcctcagaaacactcctgcaatattgttatattggatcatgctgctaatgtaacttgggatacaactcctctcatggtgctacaaacctccctgtctcattcagatgtatttttacccatagaaaaaaggactatactagacctatagttgtatgatatatttttatactgtgacttaatttgtcattaatgaactttgtacaacaccacaatgtattcatatgcacttgcagaagtaaaatgtcggacatgcaaatggaaacgctgacaagcccagctcttgttcacagaaacaggtggtttagttaaaattcattgcgggctttttatatggtgtggagtgaagaacctactatatattactaaaagcttctgaatttagacaaaaactgggaaagagtatattggggaatgatgacacacccaaacctgactcggattgctgaaattctattttttagctagtgggaaaattgttcggactcgaatgctaaaatgttttaatgataaaattttttttgagtcaaaaatagagaaaaaaaaaagaacacagaaaaccctgcattccagacagaatttgtgtatgtttcttgcatttaaaatttgctatcctgtgatatgggaaattgagttgcttatcatgtatatgtactttaaaatgtattcacaaactactgttgtatttgtataaaatatagacaaaaagattgcgtatatatttttgtgtataagctctgtaaaatagcaatcacattatgaagctgcagcagaacttcattttaaacattcacatccaaagaaacagactatttattgtccacataccctgattataaaatataccttgctgctattaaacaatagtgctgcagcttcttgtggcctacagtgttatgtttgctgtacaaaaatatgtgaactccacaaaatatatcaataaaattacagaatggttttagttaatgaataa

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