LOCUS       NM_001397397            1556 bp    mRNA    linear   VRT 17-FEB-2024
DEFINITION  Gallus gallus nuclear factor I X (NFIX), transcript variant 1,
            mRNA.
ACCESSION   NM_001397397 XM_025145700
VERSION     NM_001397397.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Tang,H., Finn,R.D. and Thomas,P.D.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
            Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1556)
  AUTHORS   Kruse,U., Qian,F. and Sippel,A.E.
  TITLE     Identification of a fourth nuclear factor I gene in chicken by cDNA
            cloning: NFI-X
  JOURNAL   Nucleic Acids Res 19 (23), 6641 (1991)
   PUBMED   1754401
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000391.1.
            
            On Nov 12, 2021 this sequence version replaced XM_025145700.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267650.5049.1,
                                           SRR13267659.248184.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN05341171 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               JAENSK010000391.1  20399-20596         c
            199-730             JAENSK010000391.1  14546-15077         c
            731-793             JAENSK010000391.1  11687-11749         c
            794-868             JAENSK010000391.1  11505-11579         c
            869-989             JAENSK010000391.1  11179-11299         c
            990-1123            JAENSK010000391.1  10597-10730         c
            1124-1246           JAENSK010000391.1  10061-10183         c
            1247-1413           JAENSK010000391.1  9687-9853           c
            1414-1502           JAENSK010000391.1  7880-7968           c
            1503-1556           JAENSK010000391.1  7146-7199           c
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="30"
                     /map="30"
     gene            1..1556
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="nuclear factor I X"
                     /db_xref="CGNC:49701"
                     /db_xref="GeneID:396207"
     exon            1..198
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..1485
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="isoform 1 is encoded by transcript variant 1;
                     nuclear factor I-X protein; nuclear factor 1 X-type;
                     nuclear factor I/X (CCAAT-binding transcription factor);
                     nuclear factor 1/X; TGGCA-binding protein;
                     CCAAT-box-binding transcription factor"
                     /codon_start=1
                     /product="nuclear factor 1 X-type isoform 1"
                     /protein_id="NP_001384326.1"
                     /db_xref="CGNC:49701"
                     /db_xref="GeneID:396207"
                     /translation="

MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSVTGKKAPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGVPLESTDGERLAKAPQCASPGLCVQPHHIGVTIKELDLYLAFFVQAPDSGQSDSSNPQGDADIKPLPNGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPGGYYNISPVTLGRRPLGPPTASGPKRPKALDEGDLEGPGDDVFYPGPGRSPAPGSSQGPWGGDVDTSPATLKKSGKLDFCSALSGHAASPRMAFGHHPLPVLAGVRPGSPRATASALHFPSGSLLPQSGPYFAHPTIRYHHGQDSLKDFVQFVCADGAAQGPQHSQRPAPPLPPALSASDPATATF"

     misc_feature    196..309
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="Nuclear factor I protein pre-N-terminus; Region:
                     NfI_DNAbd_pre-N; pfam10524"
                     /db_xref="CDD:463134"
     misc_feature    370..675
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="N-terminal Mad Homology 1 (MH1) domain; Region:
                     MH1; cl00055"
                     /db_xref="CDD:469592"
     misc_feature    808..>1410
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="CTF/NF-I family transcription modulation region;
                     Region: CTF_NFI; pfam00859"
                     /db_xref="CDD:459967"
     misc_feature    946..1128
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="propagated from UniProtKB/Swiss-Prot (Q90932.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1354..1380
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="propagated from UniProtKB/Swiss-Prot (Q90932.1);
                     Region: 9aaTAD. /evidence=ECO:0000250|UniProtKB:Q14938"
     misc_feature    1399..1482
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /note="propagated from UniProtKB/Swiss-Prot (Q90932.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            199..730
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     exon            731..793
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     exon            794..868
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     exon            869..989
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1123
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1246
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     exon            1247..1413
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1502
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
     exon            1503..1556
                     /gene="NFIX"
                     /gene_synonym="CTF; NF-I/X; NF1-X; NFI-X"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gggcgtggcttggtggtgggcgtggccaccgcggcgcttcccggcggcaaaagtgcggcgggcgccgaacttcggccaaactttccccgctccgccgcccgcccggtgccggtcccggtgccggtcccggttccctgcccgccatgccccgccgcggctgataccgccgccatgtactccccgtattgccttacccaggatgagttccatcccttcatcgaggcgttgctgccccacgtccgggccttctcttacacctggttcaacctgcaagcccgcaagcgtaagtacttcaagaagcacgagaagaggatgtccaaggaggaggaacgcgccgtcaaggacgagctgctgggcgagaagcccgaggtcaaacagaaatgggcctcgcgcctcctggccaagctgcgcaaggacatccggcccgagtgccgcgaggacttcgtgctctccgtcaccggcaagaaggcgccgtgctgcgtcctctccaaccccgaccagaaggggaagatccgccgcatcgactgcctgcgtcaggccgacaaggtgtggaggctggacctggtgatggtcatcctgttcaagggggtccctttggagagcaccgacggcgagcgcctggccaaggccccgcagtgcgccagccccgggctctgcgtgcagccccatcacatcggcgtcaccatcaaggagctcgatctctacctggccttctttgtgcaggcgcctgactccggacaatccgacagctccaacccccagggcgatgcagacatcaaacctctgcccaacgggcacctgagcttccaggattgcttcgtgacgtcgggcgtctggaacgtgaccgagctggtgagggtgtcccagacccctgtggctacggcgtcaggccccaacttctcgctggctgacctggagagcccggggggctactacaacatcagccccgtcaccctcggccgccggcctctggggccccccaccgccagcggcccaaagcgtcccaaggcgctggacgagggggacctggagggccctggggatgacgtcttctatcctgggccaggacggtccccggcccccggcagcagccaagggccctgggggggggacgtggacaccagcccagccacgctgaagaagtcggggaagttggatttctgcagcgctctgtcagggcacgctgccagcccccgcatggccttcggccaccacccgctgcccgtcctggccggcgtccgccccggcagcccgcgggccacagcctcggcgctgcacttcccgtcgggctccctcctgccccagtcggggccgtacttcgcccaccccaccatccgctaccaccacgggcaggactcgctcaaggacttcgtgcagttcgtctgcgccgacggcgccgcgcagggcccccagcattcacagcgcccggcgccgccgctgccccccgctttgtcggcctcggaccccgcgacagcaactttctgagcctgccccagcagcagtcgtggttcctctgacggttcctggccgaaaacatggaagaacaacaaaaaaaa

//