LOCUS       NM_001396845            3260 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus UBX domain protein 2A (UBXN2A), transcript variant 2,
            mRNA.
ACCESSION   NM_001396845 XM_040697219
VERSION     NM_001396845.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3260)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 3260)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000070.1.
            
            On Oct 25, 2021 this sequence version replaced XM_040697219.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267649.203270.1,
                                           SRR13267647.3445.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992323
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                JAENSK010000070.1  2315594-2315665
            73-265              JAENSK010000070.1  2316228-2316420
            266-318             JAENSK010000070.1  2318178-2318230
            319-454             JAENSK010000070.1  2319612-2319747
            455-564             JAENSK010000070.1  2321357-2321466
            565-705             JAENSK010000070.1  2322978-2323118
            706-870             JAENSK010000070.1  2328358-2328522
            871-3260            JAENSK010000070.1  2331177-2333566
FEATURES             Location/Qualifiers
     source          1..3260
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
     gene            1..3260
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /note="UBX domain protein 2A"
                     /db_xref="CGNC:12353"
                     /db_xref="GeneID:421973"
     exon            1..72
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /inference="alignment:Splign:2.1.0"
     exon            73..265
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    260..262
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /note="upstream in-frame stop codon"
     exon            266..318
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /inference="alignment:Splign:2.1.0"
     CDS             287..1159
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /note="UBX domain containing 4"
                     /codon_start=1
                     /product="UBX domain-containing protein 2A"
                     /protein_id="NP_001383774.1"
                     /db_xref="CGNC:12353"
                     /db_xref="GeneID:421973"
                     /translation="

MDNIKTVKEEWMCKSRTGDQILNGTEQNHDYFVDNLFEEAQKIGAICMSPTTVKNQVDVIIKLWKNGFTVNDGELRSYTDVGNQQFLDSVKKGELPFELQKVFEKEEVDVKVEDKKDELYLSSKKPIFHPFSGHGYRLGSATPRIISKAREDHQGAADKRCLPVVPLNDLEPITNIQIWLADGERIIQKFNVSHRISHVRDFITKYQGSEGGVPFMLTTSLPFRELQDETLTLQEAKLQNAVVVQRLRKTTEPFRLLAMKAPDDDCKTAATPNGRLKNEQKNAMKSTSSN"

     misc_feature    467..694
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /note="SEP domain; Region: SEP; pfam08059"
                     /db_xref="CDD:429807"
     misc_feature    785..1036
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /note="Ubiquitin regulatory domain X (UBX) found in UBX
                     domain protein 2A (UBXN2A) and similar proteins; Region:
                     UBX_UBXN2A; cd17160"
                     /db_xref="CDD:340680"
     misc_feature    order(809..811,815..817,821..826,833..838,842..844,
                     944..949,953..955,1001..1012,1016..1018,1022..1024)
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /note="putative UBX-p97 interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:340680"
     exon            319..454
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /inference="alignment:Splign:2.1.0"
     exon            455..564
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /inference="alignment:Splign:2.1.0"
     exon            565..705
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /inference="alignment:Splign:2.1.0"
     exon            706..870
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /inference="alignment:Splign:2.1.0"
     exon            871..3260
                     /gene="UBXN2A"
                     /gene_synonym="UBXD4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcagtggagcgcgggacagtgaggacttggtgcgctgcggaggccgcgggcggtgctgcgctgcggggccggctggaagctcagctctgcgatacgtttgtcacaaaaggcgtaccgaagctcgcagcgctgtgggtgacgtgtgggcacgtctctgtgagaagttggcaggatggagccgcttcctccgcagcgccccgggttcggctggtcgctgtgccccagtggctccttgctcgtgaccaccaacacgacatattagcacgaggagcctcaggatgaaaacatggacaatatcaaaactgtgaaggaagaatggatgtgtaagtcaagaactggtgaccagattttgaatggtacagaacaaaaccatgactattttgtcgataacctttttgaagaagctcagaagatcggtgcgatatgcatgtctccaactacagtcaagaaccaggttgatgtgatcattaaactttggaaaaatgggtttacagtaaatgatggtgaacttagaagctacactgatgttggaaatcagcagttcttggactccgttaaaaaaggggaactgccttttgagctacagaaagtatttgagaaggaggaggtagatgtgaaggtggaagacaaaaaagatgagttgtatctgtcatcaaaaaagccaatatttcatcccttttctgggcacggttacagattaggaagcgctactccaaggataatctctaaagcaagagaggatcatcaaggagctgctgataaaagatgccttcctgtagtacccttaaatgacttggagcctatcactaacatccagatctggttagcggatggggagaggataattcagaaattcaacgtttcccacagaataagccatgtcagagacttcataacaaagtatcaaggatcagagggaggtgttcccttcatgctgactacttcgctgccctttcgagaactgcaagatgagacgctcacactacaggaagcaaagttgcaaaatgctgttgttgttcagagacttcggaaaacaaccgaaccttttagactgttagcaatgaaagctcctgatgacgactgtaaaactgctgctacacctaatggacggctcaagaatgagcaaaaaaatgctatgaaaagcacaagttcaaattagtttattactgactgaaagctacacacaggcagaactagacaaaatgtaatcagcaatatctggatgcactaccattcttacctagtgtgatcttagagagcaaatgtgtgctgtgctgtaatctgctgtaacaaaaatattttcaactaattttggtgatcagagcctggctgaataatgcagcagaggtaactgtacggcagggattgtccttatgatttccttggctttgctagcatgttcttcaatgagtatacttaggtagaatggtactctgagacttaattactactggtaacacattttaggggaaaaaaaatatttatttttgcactttagattaaagagaaactgaactggttgacttaatttatacttcaatataaattgctccagtttccctttgtgttttagtaacaggcaatagatgctgcagggaagttcacatttgaactcctcgaagtattttgaaaatcattgtaagtatcattagtatttaacttcatcacgagatccgcagtgtgaatgtcctattaagtcttcacatgatggtaggtgcatgtgtaagaagattgaaattagctagcatggtgcatactggatatgaagtgcctcaaagtaagctctgaaggaatcgttactcctagtggttgaagtgttttctgtctctcatgttctgctacagatgtcttacagacagggtgatgttagactgcctggctcactaggatagagatctgcttttagcctcgtcacagagaaacttcactttttctgcagtttgccaagaggctgtagtggcttaggaggacacagttgtttttgtactacatatctgtctctgtcctgaactagccatctgatgagatgtcaactgcatgtagacaaacttcaaagatatctaaaatccatatttgaaaatcgcgacttcttctccactcttccactccctttccatccaaattctattttttttttgtccttgtattttggcgtaagatttatacccaaccatcccatgttttgctaaaggagaacattaaggactaaatatatatattttgtactggttgtgttaaatcacacatgggtttgtgtatggaactagagtctcttggtaaagactttcttggggtcttcaataaatgctgactagtttgtgctacctacacaaatgggtgattgtcagagttgaatttcttttgcatggttaaagataactttgggcttctctgttcttgttttgtatagaaaattatttaattgagatgacttgaattttttctaaaagtcctgttacttcatgctaaggatgcacttatttcatttacaggaatgtaaaactgtcaattttgtttcagaatctctctcacagtcacagtatggctgaggttggcaggggcctcacagggtctgtctgatccaaccagaggaactcagagaactcaaagcagaacacccagcaccacatccaggtggctcttaagagatctccagggagattccacagcctccctgggcaactttgcatgtgctgaagcactgagaagtacatttgaggacagtcaaatcaaagtcaactgcacaaataactgctcagtgtattcaaaaagtgaatatctgaaagctatgcagcctggtatgcactgttttcagtgctgtggacttgacgggtttatatcattcaggtttgtgtagcaaattatacaactgaattttgttttctcttccattctctcctctgttacatgtgaagcctgcctgatctctagtggtaggaaaaaatatccagacaaatcccttgataaaactgaagagacacgtcacctacgggcatatattctacccttagcttgcagggcttcctggacagtggcttttattcatcagtgcttttggatttgtcttaatggaaaaccaaatattggagaaacacacatttgattgtgaacacagttattcttacctaaaaagattaatgtaacctcgaagtagcagtacactgttcctgcgtttacagtggaaattaaatgaaaagattatgaaatgtttatgtaagatggaatttaaaaggaggaaatacagtgttgagataggtaaa

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