LOCUS       NM_001396714            3599 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus SERPINE1 mRNA binding protein 1 (SERBP1), transcript
            variant 1, mRNA.
ACCESSION   NM_001396714 XM_015291046
VERSION     NM_001396714.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3599)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 3599)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000239.1.
            
            On Oct 25, 2021 this sequence version replaced XM_015291046.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: HAEK01075198.1, SRR13267662.52386.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992531, SAMEA103992543
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-476               JAENSK010000239.1  17627694-17628169   c
            477-636             JAENSK010000239.1  17624763-17624922   c
            637-774             JAENSK010000239.1  17623518-17623655   c
            775-870             JAENSK010000239.1  17623306-17623401   c
            871-945             JAENSK010000239.1  17622629-17622703   c
            946-1123            JAENSK010000239.1  17620146-17620323   c
            1124-1297           JAENSK010000239.1  17614494-17614667   c
            1298-1336           JAENSK010000239.1  17613537-17613575   c
            1337-3599           JAENSK010000239.1  17610097-17612359   c
FEATURES             Location/Qualifiers
     source          1..3599
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="8"
                     /map="8"
     gene            1..3599
                     /gene="SERBP1"
                     /note="SERPINE1 mRNA binding protein 1"
                     /db_xref="CGNC:8530"
                     /db_xref="GeneID:424706"
     exon            1..476
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..1393
                     /gene="SERBP1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     plasminogen activator inhibitor 1 RNA-binding protein"
                     /codon_start=1
                     /product="SERPINE1 mRNA-binding protein 1 isoform 1"
                     /protein_id="NP_001383643.1"
                     /db_xref="CGNC:8530"
                     /db_xref="GeneID:424706"
                     /translation="

MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLRAAESRRKESGGGGGAQGGGGARGGPAGAQSNSSGGAGGGGPGQAGSGGGAGSAAKQLRRESQKERKNPLPPFAASAGGERREEGGGQPGAPLRKEGIRRIGRRPDQQQQQQQGEGKPIDRRPERRPPRERRFDKPADEKGEGGEFSVDKPILDRPMRGRGGLGRGRGRGRGMGRGDGFDSRGKREFDRHSGSDRSSVSHSHFSGLKHEDKRGGSGSHNWGTVKDELTELDQSAVTEETPEGEEHPPADSENKENEVEEVKEEGPKEMTLDEWKAIQSKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRASRGGRTDKLVKEFDVIHTPNQSSASAPDVDDPEAFPALS"

     misc_feature    107..625
                     /gene="SERBP1"
                     /note="Intracellular hyaluronan-binding protein 4
                     N-terminal; Region: IHABP4_N; pfam16174"
                     /db_xref="CDD:465041"
     misc_feature    734..1066
                     /gene="SERBP1"
                     /note="Hyaluronan / mRNA binding family; Region:
                     HABP4_PAI-RBP1; pfam04774"
                     /db_xref="CDD:461421"
     exon            477..636
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            637..774
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            775..870
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            871..945
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            946..1123
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1297
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1298..1336
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..3599
                     /gene="SERBP1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gggtctcttcgcggccggccatcttgtgcggcagcgagcagggcgcggggggcccggcagcatcggagcaggatcccgccgacgggggcccatcatgcccggacacctgcaggagggcttcggctgcgtcgtcaccaaccgcttcgaccagctctttgatgacgagtccgaccccttcgaggtgctgcgggcggccgagagtcggcggaaagagagcggcggcggcggcggggcccaggggggcggcggggcccgaggaggcccggcgggggcgcagagcaactcctcgggcggcgccggcggcggaggtccgggccaggcgggctcgggcggcggagcgggcagcgcggccaagcagctgcgcagggagtcccagaaggagcgcaagaacccgctgccgcccttcgccgcctccgccgggggagagcgccgggaggagggcggcgggcagcccggagcgccgctgcggaaggaggggataaggcgcattggcaggaggcctgatcagcagcagcagcagcagcagggtgaaggcaaacccattgacaggagacctgagagacgacctcctcgcgagcgccgatttgataaacctgccgatgagaagggagaaggaggagaattctctgttgataaacccatcctggaccgaccgatgcgtggacgtggtggacttggaagaggccgtggccgtggccgtgggatgggcagaggagatgggtttgactctcgtggcaaacgtgaatttgacagacatagtggcagcgatagatcttctgtttcacattcacatttcagcggcctaaagcacgaggacaagcgaggtggcagtggatcacacaactggggaactgtcaaagacgaactcactgaattggatcagtctgctgtaactgaggaaacgccagagggagaggaacatccgcctgctgattctgaaaacaaggaaaatgaggttgaagaagttaaggaggaaggtcctaaggaaatgaccctggacgaatggaaagctattcaaagtaaggatcgtgcaaaggttgagttcaacatccgtaaaccaaatgagggtgctgatgggcaatggaaaaaaggatttgttcttcacaagtcaaagagcgaggaggctcacgctgaggactcggtaatggatcatcacttccgtaagcccgccaacgacatcacatcccagctggagatcaactttggagacctcggccgccccggacgcggtggccgagggggccggggtggccgagggcgtggaggcagggccagccgtgggggcaggactgacaagttggttaaggagtttgatgtgatccacacgcccaaccagtcaagtgcttctgctcctgatgtagatgacccagaggctttcccagctctgtcctaaactggatgtcataagccaaccctgccctcgtcgggccttcctctccgaggcttgcatgcttaaggatcctaaacaactaagaaatttaaaaaaaaaaaagaaaggagactgtcattcataccattcacacctaaagactgaattttatctgtttcgaaaatgaacttctctcgctacacagaagcaacaatatggtagtcagttttgtatttagaaatgtaatggtagcagggatgttttcataattttttcagagattatgcattcttcatggatacttttttgtattgctgcttgaaaatatgcgtttccaaacttgaaatataggtgtgaacagtgtgtaccagttaaaagctttcacttcatttgtggttttttttttaattcaggattttagagattttcccctaactgcgagctggatttgactccttgcacactacctgtgtccccttggctcctgcttggcaggtttttactggcccgtggtcttttggaataggtggtgttttaatttggcagactgagtgctgtgtgaaacaccaactcctgaagttacttcggttctaatgcttaatttcaaacttggaaaaacagtcatttttcatctgcttggtggtttgtttacacagaagctttatacagaattgttagcaggtacttgcaaaatgctccaagcacactgggctctggttccatggccgtggatccggcagcgatgtgtggctcgttggtctaaacaggttttgaaattagtgtgacaccttgcattcacccctcttacctttttattcccttcttcaacagaacaagaagctttgttggcaaaaagggaaaaaagcttttaaattacctctgcttttcctttgggagggtgccctggagctgagccacctctcctcttgtgcagagctgggagggaggtggcagctgcagctcctctgcggctgtggcacagtgcccccaggacagtgggaccccatgtgctcacagcacacacaggcagccctgctgaggaggcagccctggcaggagggccgggggcactgcaggctgtgtgtgatgcagaaaggtgcagaacagaaccccggcgcttcaccttcagtccaaatttcatctgggtgctgtttgaggctgggctgctggctgacaaatgaatgtttttcagagagcgattgtaagaaatccttcacaccactgtagtaacgcgtaggtttaatttaacccccgccaatggggcctcaccgcttcgctacccaaaagcagttcagagaatgacgagtaaggagggtttcgtagggtttttatctgcagcatttagtaggagactagaagcaggattctcattttatttaatgttttacactttggacagcttaaaacatttgtagtttcttaactaggtagatagaaaacaaatggtaatgccctatttttttaaaagctgtacaggacaggcaaaaagtgtgggagacctttgactatgtaataccgcactccttgaccgtggtgttggctggctcgatttccctgaactattttctacagacgtgtttgttgtaaaccactgtgaataccatcagatcagacttcctggtgttctcacctgccagttcaaagcaccaggctgggaggaggaggcaggtttccagccggtggatggcgatagctcttggctcatttctcctgactaagcaggcaggcaggtgctcggtgcaggggctgcactccttccagcactcagtgtttctcttccgtctcccgctgtgagttggtagaatgtgctgcagtttcagttttgggacgccttgagtaatacaactaattgccttgacatgcagaaacgcttacagaaaagctttctctgtaacataagccttccccatctccagactgtgtatctgcttgtttcagttgtcactctgctttcttccagatgccttctgggctgtccagttggtcatttggggccaggctggccagaagctttcccttctgctttagagactagagcagttcccggaacggcacgtcacgtacggtgctcaagacagcttgtacttaaattggtccgtctgctgttctgatagatgtaaatttgcctctttcagtccattcgtgtcaagaactaaaactgtgaacatatatctttaatattggtgggtgttaactgaaataaaggtttattttcatgctcttttaaaaa

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