LOCUS       NM_001305422            2958 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus required for meiotic nuclear division 5 homolog A
            (RMND5A), mRNA.
ACCESSION   NM_001305422
VERSION     NM_001305422.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2958)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 2958)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2958)
  AUTHORS   Savolainen P, Fitzsimmons C, Arvestad L, Andersson L and Lundeberg
            J.
  TITLE     ESTs from brain and testis of White Leghorn and red junglefowl:
            annotation, bioinformatic classification of unknown transcripts and
            analysis of expression levels
  JOURNAL   Cytogenet Genome Res 111 (1), 79-87 (2005)
   PUBMED   16093725
REFERENCE   4  (bases 1 to 2958)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol 6 (1), R6 (2005)
   PUBMED   15642098
REFERENCE   5  (bases 1 to 2958)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr Biol 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000074.1.
            
            On Sep 23, 2021 this sequence version replaced NM_001305422.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR385784.1, HAEK01029318.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992323
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-297               JAENSK010000074.1  38177155-38177451
            298-440             JAENSK010000074.1  38181765-38181907
            441-575             JAENSK010000074.1  38187772-38187906
            576-676             JAENSK010000074.1  38188086-38188186
            677-843             JAENSK010000074.1  38191373-38191539
            844-1009            JAENSK010000074.1  38191845-38192010
            1010-1112           JAENSK010000074.1  38194302-38194404
            1113-1267           JAENSK010000074.1  38195871-38196025
            1268-2958           JAENSK010000074.1  38197422-38199112
FEATURES             Location/Qualifiers
     source          1..2958
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
     gene            1..2958
                     /gene="RMND5A"
                     /note="required for meiotic nuclear division 5 homolog A"
                     /db_xref="CGNC:51855"
                     /db_xref="GeneID:422920"
     exon            1..297
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
     CDS             156..1331
                     /gene="RMND5A"
                     /EC_number="2.3.2.27"
                     /codon_start=1
                     /product="E3 ubiquitin-protein transferase RMND5A"
                     /protein_id="NP_001292351.1"
                     /db_xref="CGNC:51855"
                     /db_xref="GeneID:422920"
                     /translation="

MDQCVTVERELEKVLQKFSGYGQLCERSLEELIQYAGGLRREILQTENQDGDLSGTISLVMTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRILNEVMVEHFFRQGMLDVAEELCQESGLSIDQSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTANQREALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF"

     misc_feature    333..1328
                     /gene="RMND5A"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]; Region:
                     COG5109"
                     /db_xref="CDD:227440"
     exon            298..440
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
     exon            441..575
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
     exon            576..676
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
     exon            677..843
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
     exon            844..1009
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1112
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1267
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..2958
                     /gene="RMND5A"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggtccccgcctgtcctcggcgctgcctgcgcacagctgggggagaccgggaagttggacgccgggccggggctggcggagggcggccgggacaggccgcggagcccgggggtggggggagacgaagaagaagaaggcggcccggtgccggccgctatggaccagtgcgtgacggtggagcgggagctggagaaggtgctgcagaagttctcgggctacgggcagctctgcgagcggagcctggaggagctcatccagtacgcgggagggctgcggcgggagatcctccagaccgagaatcaagatggagacctgtcagggacaatttcacttgttatgacgcagtgttgtaaaagaataaaggacacagttcaaaaactggcctcagatcacaaagacattcacagcagtgtatcccgagttggaaaagccattgataagaattttgactctgacatcagcagcgtggggatagatgggtgctggcaggctgacagccagcggatcctcaacgaggtgatggtagagcacttcttccggcaaggcatgttggatgtggccgaggaactgtgtcaggaatctggtctatcaatagatcagagtcagaaagaaccatttgtggaattaaatcgaatattggaagcattaaaagttagagttctgagacctgcattagagtgggcggtatccaacagagaaatgcttatggcacagaatagttcactggagttcaaactacacagattatatttcattagtttattgatgggtggaacagcaaatcaaagagaagcgcttcagtatgcaaaaaacttccagccgtttgccctaaaccatcagaaagatattcaggttttgatgggcagcctggtgtatctgaggcaaggtatagagaactcgccgtacgttcatctattagatgcaaatcagtgggcggacatctgtgacatcttcacaagagatgcctgtgctcttctgggtctctcagttgaatcaccgctcagtgttagtttttcagcaggttgtgtagcattaccagctctaattaatatcaaggcagttattgaacaaaggcagtgcacaggtgtttggaaccagaaggatgaactaccgattgaagtggaccttggtaaaaagtgctggtaccattcaatatttgcctgtcccattctccgtcagcaaacaacagataataatccacctatgaaattagtctgtggtcatattatatcaagagatgctttgaataaaatgtttaatggcagcaaattaaaatgcccctattgtccgatggaacagagtcctggagatgccaaacagatatttttctgaagaaaagcttcattatgcggtctgtaagtgacactctgcaattcaggtgcatttcaggagaattaaaacacacctgttccattttatgcagcagactgaggactccaatgtttgtataagctaatgctacagaaactttgccaacatttagtatatacataccaagtggaaatgctacagaaatattattaccatagggctttactatactcttggtctccatacctgatcaagttactacaccagcagttgtcattcaatgcaggtttttgtactcaattatatggtgactttttactttttaaaagcagaaatggatcacccccatttgtttaatattcctcctgctatcatctatcggtaactgtcaccttagagaatgtttgtgcaagaggttttatttcctgtaatgtgtacataattaaaggtaaatacttcaggaaaaaaaaaaagtttgataaattgaatagtggttataaaactaatttgtattttttttgctgaaagagctgtgatatattctgagtttttctttcaaacattttttcaacttttacatagaattcaaagtaaatgtgcatatatataaaatatataaatatatagccctaaggggctacctgttaaaatccatcactaatttataagggtgatgtgtggatagattactgctggaacagagggaataggaaatcctgttccctaggtttcaaatgtttgtgtaaaagaatactcaataaaaggaaattctgaagtggaaatgcttttagttgatgacgtttgctctctggccttcgtagtcatgttctttggactttgtattcgggattaggctataaatgtcatgttgctgtatagtttaatagtcattatagtgtgctatttataaacagttatcaaaaccaaataaattgtataagtattcattgttaaatgggggaaaagcatgttctgatgcagtcttctggtcacgacgctgcacttggcagaattgggccctacgtcacgtattaggaggtagcaaattttctgtagcttgagaacactttgcttctagccttgtttttgtagtagactattactgccattgccactttttctgctcaatttgtcatattgttgactaggtaaatttgtactcatgaacaaggtgtagatcatggcagttcaatctttttctagtgtgcagatatttgtatttattgcactgtcctatagtagggcaagcagccataaggcatgcgaagctacgtgtaaaatcctatttctgtattgtggagtaaaaaacctgagcttacatggttgaatactgacacactggttgaatgcactagcacaatgcactacaaagaagaccgtctgtgagacatctccaccttttgaatctgtgtgccacctgacttgagagactgagttggactctgtcggatcagtgacaacggacatcctgaaagagacactaagagcaacaagtcaaggcacacacgttttgagcctgaaatgtgtttggcacgtgtgaacaatgcaggtgtgtgactttctgcaaaacttctattgtattcacactgagttccaaccaaccaggttaccgagtggtaaaattaacaataaacaggtgaggatatta

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