GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-02 23:53:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001199521            2108 bp    mRNA    linear   VRT 05-NOV-2021
DEFINITION  Gallus gallus leucine zipper protein 2 (LUZP2), mRNA.
ACCESSION   NM_001199521 XM_420933
VERSION     NM_001199521.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr Biol 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000212.1.
            
            On Nov 5, 2021 this sequence version replaced NM_001199521.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: HAEK01001471.1, HAEK01040797.1
                                    [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN08016554, SAMN08016668 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-234               JAENSK010000212.1  1455788-1456021     c
            235-597             JAENSK010000212.1  1413420-1413782     c
            598-715             JAENSK010000212.1  1360001-1360118     c
            716-786             JAENSK010000212.1  1358471-1358541     c
            787-868             JAENSK010000212.1  1355775-1355856     c
            869-931             JAENSK010000212.1  1348767-1348829     c
            932-994             JAENSK010000212.1  1327484-1327546     c
            995-1057            JAENSK010000212.1  1325643-1325705     c
            1058-1132           JAENSK010000212.1  1318406-1318480     c
            1133-1297           JAENSK010000212.1  1315253-1315417     c
            1298-1384           JAENSK010000212.1  1298541-1298627     c
            1385-1462           JAENSK010000212.1  1289670-1289747     c
            1463-2108           JAENSK010000212.1  1288531-1289176     c
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
     gene            1..2108
                     /gene="LUZP2"
                     /note="leucine zipper protein 2"
                     /db_xref="CGNC:3249"
                     /db_xref="GeneID:423001"
     exon            1..234
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            235..597
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    260..262
                     /gene="LUZP2"
                     /note="upstream in-frame stop codon"
     CDS             536..1570
                     /gene="LUZP2"
                     /codon_start=1
                     /product="leucine zipper protein 2"
                     /protein_id="NP_001186450.1"
                     /db_xref="CGNC:3249"
                     /db_xref="GeneID:423001"
                     /translation="
MKFLPAYYLLPLFPALVFSTRQGYEELERQLKEVFKERSNILRQLSKTSKELEGIKVNLQSLKNDEASARSDVQKLLELGQKQREEMKSLQEAFQKQLNEAVEKAEKQQATINFLKTEMERKSRMIRDLQNENKSLKNKLLSGNKLCGIHAEESKKIQAQLKELRYGKKDLIFKAQRLTDLEQKLAAAKDELEKAALDKESQLKALKDTVQLCLSSVLHNQPPTIHRIPPKPAEKLTSSATKGSKVQFPVINPKQNASAEKESLHVASRKEENQSVQECDSQDVGKTCLGNYNNSTSHLKMEETETSLQQMLRNPPWTKPEDKKPPERSEKKFEDSVGTKEKKL"
     misc_feature    <608..>1180
                     /gene="LUZP2"
                     /note="Chromosome segregation ATPase [Cell cycle control,
                     cell division, chromosome partitioning]; Region: Smc;
                     COG1196"
                     /db_xref="CDD:224117"
     exon            598..715
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            716..786
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            787..868
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            869..931
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            932..994
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1057
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1132
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1297
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            1298..1384
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1462
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
     exon            1463..2108
                     /gene="LUZP2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
acctatgatggggaacaacaaagagtttcttgcagctttcaaggcctttgtagggcagacgtgtgtttgcagacagtctgttcagtttaataacctcagcacatctttcacgtaatggttccttgactggctcctagctccactcagctaattgaaaccactgcagttcaagagcacagccctgtagtcttcattaaacatcaaggctgctatctgaggatccgcacctagcaggctgaatccctaagccctgctgccataacctcaaagccaagtgccagctgctgcctgcccgtccctccccatccaccactaccaaaccctccaggacgcggttggaggcagcacgctgactgatcgcctcaagcaggctgtgggctcgcagcagcagcagctcgctgcctctgacatcactcccggagctcacatcccactccgagctcctctcgttagtcggtccgtcggtcgggagaggaggcaggagacgctgcgaagaggatcgctgaggaacagaacgaaacagaggggctacatcatgaaattcctccctgcttattacttgctgcctctttttcctgcgctggtcttcagcactagacagggctatgaagaactggagagacagctgaaggaagtctttaaggaaaggagcaatattcttcgtcaactgtcgaagacctctaaagaactcgagggaattaaagtaaacctccagtccctgaaaaacgatgaagcatcagccagaagtgatgtgcagaaacttcttgaactgggccaaaagcaaagggaagaaatgaaatctcttcaggaggcctttcaaaagcagcttaatgaggcagttgagaaggcagaaaagcagcaagctactattaattttttgaagacagaaatggaaaggaagagcagaatgatccgggacctccaaaatgagaacaaaagcctcaaaaacaagctgctgtcaggaaacaagctttgtggtattcacgcagaagagtcaaaaaagatccaagcccagctgaaagaacttcgttatggcaaaaaagatttgattttcaaggcacaacggctaacagacctggagcagaaactagcagctgcaaaagatgaattggaaaaggcagcccttgacaaggagtcgcagctgaaagctctgaaggacactgtgcagctttgcctgtcctctgttctgcacaatcagcctcccactatccatcgaatccctccaaaaccagcagagaagctgacatcctcagctacaaagggctcgaaagttcaatttccagtgataaaccccaagcaaaatgcctcagcagagaaagagagtctgcacgtggcctcaagaaaggaagaaaaccagagtgtgcaggaatgtgattctcaggatgttggcaagacatgtttggggaattacaataattcaacatctcatttgaagatggaagaaacagagacaagcttgcagcagatgttgcgcaacccaccatggactaaacctgaagacaaaaaaccacctgaaagaagtgagaagaagtttgaagattctgttggcacaaaagaaaagaaactgtaaatgccactaatacacatttacaaacgttcatcacttgcttccaacttcgcattctttttagtccataggcaagaataaaccaggtttctaaagcatgcatttttcactattttatgaatgtttgttagctagtctagcatagatcaattagtacctttcagcaataatccaaaatggatgtttgaagaattgctttgtaatacagtccagtttttgaactattatatctgacttagtaattacatactataaattagtttctttgttaaaaaaaagccattcccaagtattttcttagtccgttctatttaatgtacctttttgtcagattaggttttagattaagaattaaggggcagtgaatgcagaaaaaataataattaaaaatctatgtaaacctagtcagagtacaatgcaactcataacgataaatgtaaagatgggacaatagggctccatgtatacttgactatgagtaataccatttcaaatctgcttacttaaacaataaagtatgtttggttgctgttttttctaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]