LOCUS       NM_001198654            1166 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus peroxisomal biogenesis factor 10 (PEX10), mRNA.
ACCESSION   NM_001198654 XM_417558
VERSION     NM_001198654.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1166)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000329.1.
            
            On Sep 23, 2021 this sequence version replaced NM_001198654.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: HAEL01000774.1, BX933966.2
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992323
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               JAENSK010000329.1  1544921-1545047
            128-208             JAENSK010000329.1  1545269-1545349
            209-615             JAENSK010000329.1  1545650-1546056
            616-791             JAENSK010000329.1  1546276-1546451
            792-927             JAENSK010000329.1  1546741-1546876
            928-1166            JAENSK010000329.1  1548285-1548523
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="21"
                     /map="21"
     gene            1..1166
                     /gene="PEX10"
                     /note="peroxisomal biogenesis factor 10"
                     /db_xref="CGNC:834"
                     /db_xref="GeneID:419396"
     exon            1..127
                     /gene="PEX10"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..999
                     /gene="PEX10"
                     /EC_number="2.3.2.27"
                     /codon_start=1
                     /product="peroxisome biogenesis factor 10"
                     /protein_id="NP_001185583.1"
                     /db_xref="CGNC:834"
                     /db_xref="GeneID:419396"
                     /translation="

MALGPAGPARLVRCGQKDELYRSGLRSGAGTALHGIAGAKKWLEWRREIELLSDVAYFALTTLSGYQTLGEEYVNIVQVDSTKKRVPSFLRRAIFVSLHTIVPYYLEKGLQHLEHELQIEDDGARTLQSNPALGLSSRTLIRNWIQKQVRELTEQQKKTILQVVYILKQSIPLLHRLHLAVFYIHGTFYHLSKRIAGIRYLHFGGLQGEDQSIRSSYKFLGIISLFHLLLTIGVQIYSFQQKQRARQEWKLHRNLALQKNTIKEGTTGRQSRCTLCLEERRHATATPCGHLFCWECITEWCNTRTECPLCREKFHPQKLIYLRHYQL"

     misc_feature    67..744
                     /gene="PEX10"
                     /note="Pex2 / Pex12 amino terminal region; Region:
                     Pex2_Pex12; pfam04757"
                     /db_xref="CDD:398431"
     misc_feature    826..981
                     /gene="PEX10"
                     /note="RING finger, HC subclass, found in peroxin-10
                     (PEX10) and similar proteins; Region: RING-HC_PEX10;
                     cd16527"
                     /db_xref="CDD:438190"
     exon            128..208
                     /gene="PEX10"
                     /inference="alignment:Splign:2.1.0"
     exon            209..615
                     /gene="PEX10"
                     /inference="alignment:Splign:2.1.0"
     exon            616..791
                     /gene="PEX10"
                     /inference="alignment:Splign:2.1.0"
     exon            792..927
                     /gene="PEX10"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1166
                     /gene="PEX10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

accctgcgccgcgccatggcgctgggccccgccgggccggctcggctggtgcgctgcgggcagaaggacgagctgtaccggagcggcctgcgcagcggggccggcaccgcgctgcacgggatcgcgggggctaagaagtggctggagtggaggagggagatcgagctgctctccgacgttgcctacttcgccctcaccaccctgtcaggttatcagactctgggtgaagaatatgtcaacattgttcaagttgactccaccaagaaaagggtaccttcttttcttcgacgggccatcttcgtttctctccataccatagtaccctattacttagaaaagggattgcagcatctggaacatgagttgcagatagaagatgatggggcaagaaccttgcaaagcaacccagcacttggcttatccagtaggaccttaatacgaaactggattcagaaacaagtcagggaacttacagaacaacagaagaaaacaatcctacaagttgtgtacatccttaaacagtccatccctttgcttcaccgactacatctggcagtgttctacatacatggcactttttatcacctatctaaaagaattgcaggaatcagatatctgcactttggaggactacaaggagaagatcagagcattcgatcaagttacaagttccttggaataatttcactcttccatcttcttctgacaattggtgttcagatatacagcttccaacaaaagcagagagcaaggcaggaatggaaactacaccgcaacctagctctccagaaaaatacgataaaggaaggaactactgggcgccagtcccgctgcactttgtgtttggaggaacggagacatgcaacagccacaccttgtgggcacctgttctgctgggaatgcatcaccgagtggtgtaacaccagaacagaatgtccactgtgcagagagaaatttcatcctcagaagctgatctacctacgccactatcaactgtaaggaaaaatcctgtctcattacaagggcctctgctctcataccttcatacagagtggtcatacagttcaggttagtccaagaacaagactttattgtaaaactggtaactgcctgtacaaggtggcacttcattcctgttttacaaaataaatctctttctgcctctt

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