LOCUS       NM_001031474            6355 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus UBA domain containing 1 (UBAC1), mRNA.
ACCESSION   NM_001031474 XM_425327
VERSION     NM_001031474.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 6355)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6355)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAENSK010000308.1.
            
            On Sep 23, 2021 this sequence version replaced NM_001031474.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720445.1, SRR13267662.11143.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992323
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-306               JAENSK010000308.1  7942809-7943114
            307-427             JAENSK010000308.1  7948701-7948821
            428-501             JAENSK010000308.1  7950292-7950365
            502-609             JAENSK010000308.1  7951625-7951732
            610-712             JAENSK010000308.1  7952245-7952347
            713-821             JAENSK010000308.1  7953037-7953145
            822-1053            JAENSK010000308.1  7954460-7954691
            1054-1140           JAENSK010000308.1  7955784-7955870
            1141-1279           JAENSK010000308.1  7956011-7956149
            1280-6355           JAENSK010000308.1  7958409-7963484
FEATURES             Location/Qualifiers
     source          1..6355
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="17"
                     /map="17"
     gene            1..6355
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="UBA domain containing 1"
                     /db_xref="CGNC:1198"
                     /db_xref="GeneID:427754"
     exon            1..306
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    103..105
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="upstream in-frame stop codon"
     CDS             169..1395
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="UBA domain-containing protein 1; E3
                     ubiquitin-protein ligase subunit KPC2; kip1
                     ubiquitination-promoting complex protein 2; ubiquitin
                     associated domain containing 1"
                     /codon_start=1
                     /product="ubiquitin-associated domain-containing protein
                     1"
                     /protein_id="NP_001026645.1"
                     /db_xref="CGNC:1198"
                     /db_xref="GeneID:427754"
                     /translation="

MFVQEEKIFAGKVLRLQVCTMEGAEWLEEVPEDTTVEKLKERCLKHCVPGSLEDPKTVTHHKLIHATSEKVLTDSKTVLEENIQDRDVLLLIKKRAPPPLPKMADVSAEEKRKQEQKAPDKDAILKATANLPSRNVDRTVAQHNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKANAMLDEDEEDRVDEIALRQLTEMGFPESRAVKALRLNHMSVTQAMEWLIEHADDPAVDAPLPGQTPSEAAAEAGASSAEATAGPSSEAGGEEAKDELTEIFKKIRRKREFRPDPRAVIALMEMGFDEKEVVDALRVNNNQQNAACEWLLGDRKPSPEDLDKGIDTNSPLFQAILENPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT"

     misc_feature    193..453
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="ubiquitin-like (Ubl) domain found in Kip1
                     ubiquitination-promoting complex protein 2 (KPC2) and
                     similar proteins; Region: Ubl_KPC2; cd17066"
                     /db_xref="CDD:340586"
     misc_feature    466..525
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5ZJI9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    751..864
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="UBA1 domain found in Kip1 ubiquitination-promoting
                     complex protein 2 (KPC2) and similar proteins; Region:
                     UBA1_KPC2; cd14303"
                     /db_xref="CDD:270488"
     misc_feature    871..993
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5ZJI9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1042..1158
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="UBA2 domain found in Kip1 ubiquitination-promoting
                     complex protein 2 (KPC2) and similar proteins; Region:
                     UBA2_KPC2; cd14304"
                     /db_xref="CDD:270489"
     misc_feature    1234..1353
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /note="Heat shock chaperonin-binding motif; Region: STI1;
                     smart00727"
                     /db_xref="CDD:128966"
     exon            307..427
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     exon            428..501
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     exon            502..609
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     exon            610..712
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     exon            713..821
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     exon            822..1053
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     exon            1054..1140
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1279
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
     exon            1280..6355
                     /gene="UBAC1"
                     /gene_synonym="KPC2; UBADC1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcccctcagcgcagcgccgggcccagccgtgccggcgacgcggggtcctcgcagctcccccgggctctcggcctcccggggtcaccttcatgggccggcggtagcgcggcggggcccggggccgtgctgaggcgtcggcggggcggggaggagcggggccggcggcgatgttcgtgcaggaggagaagatcttcgcggggaaggtgctgcggctgcaggtgtgcaccatggagggcgccgagtggctggaggaggtccccgaggacaccacggtggagaagctgaaggagcgctgcctgaagcactgtgtacctgggagcttggaggatccaaagactgtgacacatcataagttgatacatgctacttctgagaaggtgctaacagactcaaaaacagtgttggaggaaaacattcaagacagagatgtcttgctcttaataaagaagcgtgcaccacctccactccccaaaatggcagatgtgtccgcagaggagaaaaggaaacaagagcagaaagctcctgataaggatgctattctcaaagcaactgcaaatctgccctctcgcaacgtagatcgcactgtggcccagcacaacatgagggatttccagacagagctccggaagatcttagtttccctcattgaagttgcacagaaattgctagcactgaacccagatgcagttgaactatttaagaaggcaaacgccatgctggatgaggatgaggaagacagagtggatgagatagctctgcggcaacttacagaaatggggtttccagagagcagagctgtcaaagcccttcgattaaatcatatgtcagtgacacaggccatggagtggttgatagaacatgcagatgaccctgcagtggatgctccactgccaggtcagactccatccgaagctgcagctgaagctggtgcatcctctgctgaagcaactgcaggtccaagttcagaagcaggtggggaagaagccaaagatgagctgactgaaatatttaagaagatacgaaggaaaagagagtttcgcccagacccacgggctgtcatcgccctaatggagatgggatttgatgaaaaagaagtggtagatgcactcagagtaaacaacaaccagcaaaatgcagcttgtgaatggctgctgggagacagaaagccttctccagaggacttagataagggaattgacacaaacagccctctcttccaagccatcttagaaaacccagtagtacagttagggttaaccaaccctaaaactctactagccttcgaagatatgcttgaaaaccccttgaacagcactcagtggatgaatgatccagaaactgggcctgtcatgctacagatctctcgaatcttccagacactgaatcgcacatagaggggaatgccagaccactgtgccacttcctgctgtcccttgtgtcaccttctcaatggggagggtgcatggattgtttggggaggggggagggatgctgtctgagtaggggtctcatgtgagagcttatgtagttatggccaactgaagttaattgccttgtgaatttagtgttagtggaagaggtttgaagacttgtatatgttttcaggtgttaggttaaaaataaagtatatcaaaaataggaaaaggttttgtgaaaacaattaagaatctgcttgtcagaaagaaatatgatattgcttgataaaaaaaaaaggcctgtgacagtagttttctagccagttttactagcatctggctagtgtttacaaaaggtcactgaccactagcataggatattaatcatctccatgcagtattaatttatggctatatcaaattataaaatgcttttaaaaattgattcttaggaaatattttttaaaagtccaaatattgggagagcaagcacatttctatccagacttgttcgtcttgcattatgattcaaacagaataattcgtagatggaattcatttaataaatagcattactttttcctatttattttctgcgttagtgttcttccagtccaatggtaggtacacttctcagagattgtcagctatgttaaagatgcagtatctctttcatggcaggacttgttacaccaacacttggattctccagtaggctgcagttcctaagtttatcctatgccatatcttagtgcaaggaggatatcttcaaatggtgtttgtttttccatatttatgtgcacggttttgcagaggggaacttgtgttgttgactgtttcaaactgtttacaaaaaagcaattcatttgcatgggttttccccaaatggtgacctgcaaagaagcagaaacactttgggttttttattttttttaacatattcaaaagcacgctcagaattaattactttggatagaagtggttatccttgaagcttttactttggaaataccaaggaagtcaggctatgtcactcctagttttgttggaagactgactggagatttcagacaggtgccgtgagcttttaagaaaagaactggtgaatgttcagcttctttcttgtgattgggccatgcaggcttttgttttcaaggcagtgaaacacagctgacatctgtcacaatccctgctgcaccttgtgtttcgtagccttttttctgtttgaaaggtgtctgtcagatagatcccaaatagctctgccaagttcctttctaagtgtatgttttacacagttgtgtttttgtttcaaaaaggaaaatgctacaagatgcaacctgaaaccctatgacaagttttagcctgaacttggcacctcgtctgtgctattgtgcagtcgaggcactgaagttgccaatttctcataattaatacgaagggtggggaaacaaaacagcatgagattttatcttgacttactatcccaggatttttttttaatttgttatctgtagtttcatgttaagttttacagttcacagctgctgaaatatttacttttgtgtttagaaattccagggtttatagaggtgtttgttcggattggttgttccaacacccagctgctcctgggactgcctgctgccactggcaaggcagtgtgggtgatgaatttgagcaggctctccagttttcacgtggttgaagctgaatgctgtctgacctccttcacaggagcagagtggctcctcctaagcatgaagattctgctacttgtgtgtttctgcagtgtggtattggcaggatctgctactgaacttgttctctctgcgtcggattggtaagagcggtaaaagttatcagagttgcctcccttggaatgccagaacagagtcagggccactgctggcttataaggaaaaatagtatgagtaaaacaaggcatgcatgtgtaatagatgaagataaggatgctgaggttcaacaacataacctagtgatgtagcagcaattaaaaactgtacagataaaggaatactgcatctttaaaacgcatgaaggcttgagaatatgtggttgtttctggctttgcttatttcagagctcaaagcttatgtagctgaagtgtcggagagattaaggttccagtggccagtctctgaaagaggccagaacgtaggaggtgtgatgtttgcagcaaggctaaagagttgaactaaatgaaaccaaaactgcccttaaggttgaacaaaccctttgaggagctgatcaagacaccagtattgttctgtgggtatgaatcagcagcagacttacggagctgtgtgtccctgtgacacctgggtgtattgttgcttgattagttaccagtgggaggatggatgctaagttcgttatgcttgcagaagcgttgatttatcccaatctttacaaaacctgcaaaaatcttgaatgatcactgcttttagtcagaacatgtgtaggcaggtctccaggccagaggagtctgtgttaagagtgcttcctgggcacaaaccttcctgttccatggctaaaggttaaaaggctgatggatctgctctgtaagcaagtgagaggtccataagcatattggaatataagtttttcttttaataaataagttaattttgtgaagaactactcctgggagtaagggtttacaagttcaggtcctatgcttgcatctctggtgttcacgttgtaactagtaaagatatgccatgtgtaagtgtctcataacatggccaaaggagcgttggaagcctgtgaaatcaagaagtaaggaaatgaaacagtaggtggttcttacaatgcagtgtctattccttacaactcttctagctctttgccctatccattgatcaagacaatcttctgtcttttgatattacgtgactttgaaagctagctagctatttatttaaatatatataatttatgatttttgtcatcaaaacactgatatttttaatagaaatgtactatatggaagtttgttctcagggctttgtgtttatactcaacggggggtgcacttaaagggatgtatttggaagaaattccagtggccactttgcagcttggaccttggttagttgtgacctatgagactgagatagcttaatgctcctgttaaacctctaggtgcaatccaaagaaaatgccattcttttctctccgtgtgagcagtggcatgagtcttcctttcagattgctgcgtcactgtatggaaatggccacaccagattatccatccctttcacagtttgatctttaccaccatttcagggacacctctgttctccatgcagctggaaaataatcttgcactgtttccaaagcagtcatcactgcactcgtgctcttctgggaaagtgcaaggttcgctcctgcaagagctctgaaagctgcagctaattgcttggtttgggctgtcccagatgtgtcccagaaccctgacccccattgctctcctcgctctcctggaaccaacttgtctttcagagattgatgttcatatccaagatacttgggtgcttatggaaatcctttgtagttgagactgttagtttgtttgacattgcgattcacagctgaggacctcgaatatgttctgcaagcattgcaccaaacgaatgtactgtaacactgtcagcaaatgttgcctgtagcggagatatggaggttcccagtgacttcagcagcagttttcttgaaatacagtgagtgtttcatccaaagttatcccccgtttttctactttcagtaagtagcatttttattaactggcagaatagcagcacttggagctgggtctttccatccagttgtaagtcattatgctttaaggcataagcagaccactgactgtgccctctcctctgggacaattgttttgctgtcagaattaggacagtcagtgaacttggccaggagggcggccccagtgctcctgcagaggaaagagcaagcagtgtacattgtgtctatgtgaacgtgtcctcatggcggttgttctcacttgcatcctgatatccaggtacaacaacagggggtttaagggcctctttccctagatttaaagatcttcaatgcagatcctgtttgcagcatgtgaacttcaataaatatagatgcattgaattctttctgaatttaggtatggttttatatcatgttctggggagagggaagaaattgaatcatgttttaaacggagccccacaaaacgaagtgtctttgcagtgggtaacagaggcctgtagagatctttaatttgcagatttttattgtaatttaacaacctgtacaagaatgtgatttgccattcagcacttaccacagagtagcaccagtaaaactatactgcgaggtactgacttcagcgtttttcatttcacctgtgtatgaaatcatgaggtatggcatatgataatttttatatgaagctgacactggtgtgtggcatgcacagctgtttctaagatgtaacattacttttatgaagcttaactagggcggacatcactgagcctgtggaattcagggttcattctggacacgctgatgtgggtcactgacttctccctggctggggagcccagcagcaggctttgcttcaatacagagcccttcaggcagcaagtaagaagtgctactgacttgtttttcttctaaacatttgctgttgtctattgaaatattttcctagaggttattgaggtcattagctaagccagacctgttcagattggaacagttatgtacctttagcatgtggagaagtcatacccatgagcaagactagaatgaatgctgagtctttaagcctgctcacacatacacactaaagacactgatgttatgtgtgctgtaaatttatattataacttaaaaataaaggttttttgatttatta

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