LOCUS       NM_001024694            1602 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus retinaldehyde binding protein 1 (RLBP1), mRNA.
ACCESSION   NM_001024694 XM_413865
VERSION     NM_001024694.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Kaylor JJ, Yuan Q, Cook J, Sarfare S, Makshanoff J, Miu A, Kim A,
            Kim P, Habib S, Roybal CN, Xu T, Nusinowitz S and Travis GH.
  TITLE     Identification of DES1 as a vitamin A isomerase in Muller glial
            cells of the retina
  JOURNAL   Nat Chem Biol 9 (1), 30-36 (2013)
   PUBMED   23143414
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAENSK010000245.1.
            
            On Sep 23, 2021 this sequence version replaced NM_001024694.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX935536.2, HAEK01023082.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992393
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-231               JAENSK010000245.1  12527451-12527681
            232-275             JAENSK010000245.1  12528445-12528488
            276-404             JAENSK010000245.1  12528645-12528773
            405-606             JAENSK010000245.1  12528947-12529148
            607-785             JAENSK010000245.1  12529487-12529665
            786-944             JAENSK010000245.1  12530292-12530450
            945-1055            JAENSK010000245.1  12530803-12530913
            1056-1602           JAENSK010000245.1  12531177-12531723
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="10"
                     /map="10"
     gene            1..1602
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /note="retinaldehyde binding protein 1"
                     /db_xref="CGNC:5041"
                     /db_xref="GeneID:415492"
     exon            1..231
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /inference="alignment:Splign:2.1.0"
     exon            232..275
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    243..245
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /note="upstream in-frame stop codon"
     CDS             264..1214
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /note="cellular retinaldehyde-binding protein"
                     /codon_start=1
                     /product="retinaldehyde-binding protein 1"
                     /protein_id="NP_001019865.1"
                     /db_xref="CGNC:5041"
                     /db_xref="GeneID:415492"
                     /translation="

MSAVTGTFRIVSEEEQALRTKLERLTTKDHGPVFGRCQQIPPHTLQKAKDELNETEEQREAAVKALRELVQERAGSEDVCKAVAEKMQGKDDSFFLRFIRARKFDVHRAYDLLKGYVNFRQQYPELFDNLTPEAVRSTIEAGYPGILASRDKYGRVVMLFNIENWDYEEITFDEILRAYCVILEKLLENEETQINGFCIIENFKGFTMQQASGIKPSELKKMVDMLQDSFPARFKAVHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGEELESFYQEIDADILPADFGGNLPKYDGKATAEQLFGPRIEAEDTAL"

     misc_feature    267..269
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /note="N-acetylserine.
                     /evidence=ECO:0000250|UniProtKB:P10123; propagated from
                     UniProtKB/Swiss-Prot (E1C1U1.1); acetylation site"
     misc_feature    441..611
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /note="CRAL/TRIO, N-terminal domain; Region: CRAL_TRIO_N;
                     smart01100"
                     /db_xref="CDD:215024"
     misc_feature    687..1133
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /note="CRAL/TRIO domain; Region: CRAL_TRIO; pfam00650"
                     /db_xref="CDD:425800"
     misc_feature    order(729..731,735..737,741..743,819..821,864..866,
                     870..872,918..920,930..932,942..944,954..956,963..965,
                     972..974,978..980,999..1001,1020..1022,1056..1058)
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /note="phospholipid binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:238099"
     misc_feature    order(957..959,1053..1055)
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /note="salt bridge; other site"
                     /db_xref="CDD:238099"
     exon            276..404
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /inference="alignment:Splign:2.1.0"
     exon            405..606
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /inference="alignment:Splign:2.1.0"
     exon            607..785
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /inference="alignment:Splign:2.1.0"
     exon            786..944
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /inference="alignment:Splign:2.1.0"
     exon            945..1055
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1602
                     /gene="RLBP1"
                     /gene_synonym="CRALBP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agccttttggaaggctttagtggggggtttcctgcctgctttacgtggacttaattataaagctgcagtgagttgatgccttgtgacggcctaatcccaacccggtgactctacaaagctttcgctgggatttcgtgctgctccactccagtcctgcagcccagccccgctccagcagccccccaggccctcaacctccacggacaaccggtttggcattccctgcccctgtgtcctacagctgatcaaggctaaaagaagacatgtctgctgttacgggcaccttccgcattgtctcggaagaggagcaggcgctgcgcaccaaactggagcgcctcaccaccaaggaccacggccctgtttttgggaggtgccagcagatcccccctcacaccctgcagaaggcaaaagatgagctgaatgagacggaggagcagagggaggcagcggtcaaagcgctgcgggagctggtgcaggagcgggccggcagcgaggatgtctgcaaggcagtggcagagaagatgcaggggaaggacgattccttcttcctccgcttcatccgtgcccgcaagtttgacgtgcacagggcctacgacctgctgaaaggctatgtgaactttcgccagcaataccctgaactctttgacaacctgacccccgaggccgtgcgcagcaccatcgaggcgggctaccccggcatcctggccagcagggacaaatacgggcgggtagtgatgctcttcaacatcgagaactgggactacgaggagatcacctttgatgagatccttcgtgcctactgcgttatcttggagaagctgctggaaaacgaagagacccagatcaatgggttctgcatcattgagaacttcaagggcttcaccatgcagcaggcatcagggatcaaaccctccgagctcaagaagatggtggacatgctacaggactccttcccagcgcggttcaaagctgtccacttcatccaccagccctggtacttcaccactacctacaacgtggtcaaaccgttcctgaagagcaagctgctggagagggtgtttgtgcacggcgaggagctggagtccttctaccaggagatcgatgctgacatactgccagcagacttcggtggcaacctgcccaagtacgacggcaaagcaactgcagagcagctctttgggccccgcattgaggctgaagacacggcactttaagtcaggggctgctccctttcccctgtaaaataagatcagaggtggtcccctaaccccaaccacctccataccgtagcaatggatgagtgactgctcgcaatgaggtgctctgggtgtgttgctccgcgtctgtgcctgtccccaaacctggcagcgggctgcctggctgcagctgggatgcagcaagcacatgccttgctctgctccatccttagcctttacttctgtggggcgatgcagccagagaacactgtctgcacagccagctcgatgcacttgcatttggtcactggggagcaacacagccagaggctgccatggctgaagcccctgctaggggctggctgaaacgtgtatgcagagaaataaagaagcatttaacaacaga

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