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2025-04-23 14:19:11, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XR_011669897            2746 bp    RNA     linear   VRT 18-FEB-2025
DEFINITION  PREDICTED: Salvelinus alpinus ClpB family mitochondrial
            disaggregase (clpb), transcript variant X3, misc_RNA.
ACCESSION   XR_011669897
VERSION     XR_011669897.1
DBLINK      BioProject: PRJNA1211668
KEYWORDS    RefSeq.
SOURCE      Salvelinus alpinus (Arctic char)
  ORGANISM  Salvelinus alpinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salvelinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_092107) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_045679555.1-RS_2025_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/27/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2746
                     /organism="Salvelinus alpinus"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:8036"
                     /chromosome="22"
     gene            1..2746
                     /gene="clpb"
                     /note="ClpB family mitochondrial disaggregase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads"
                     /db_xref="GeneID:139549508"
     misc_RNA        1..2746
                     /gene="clpb"
                     /product="ClpB family mitochondrial disaggregase,
                     transcript variant X3"
                     /db_xref="GeneID:139549508"
ORIGIN      
tgtagccaacattaaaggttgatctgtaaagttatatttgaatggtgtatgtgatcaaatggttgaccctgggttatagatgtctccaacaaatatgttgttttcctatttcctaagctcccacattgtggccagagttcttcctcttctcctgggggattttatatggtggttgacaaccaactttaaggtgcatcaccgccaccaactggactggagtgtggaccagtgagaaggaaggtctaaattctactcaatattctcatctccctaaggaaacgaaatacaacaattaaatactgcatctcctgaagttttccccagcagttcactcaatgttggctagcaccagcccctataggctattcgtgcttgtattaggcctagtgactgctgactgctgcgacacaacacgtgtttgttgcgttatccagcctcggcagtgccacaggatctgaacgccatctggtggcgaatcatagcgaaggagaaagttattttgtttgttataaagcagaacaaaagtaaattttttcatatggggattgatttagatgaagttgtgtgtggaacattttaagactatgaataaatccagagttaaccttcataagaggtgctggagtagcctctgcgataccaggaagtggagccagttagtttctgtaggaaaaaaactattattcccatgatgcagttcatgttccagtgacaacccatgcttgggttgtttttgttctgtcgctgctgtcaaccattagcagataaataacggtctataggcggaataacggcagtagacttcaattaaaggcgttgtcgtttctagtaagtactatcatcaggcttaacgttgcacggttcgcgtgttttcccgcaatgttgtcttcggttccaccgcggatcttcatgcgaaggtcgcgcagcctttcgccgtgccgtgtgctccagacaagcacaaaggacgccgcgaggaaccacatcatcctcgataaagcggacgccaaccggaaccccatcgtttctacctcccgtgtctcccgtagaggaattctgagcgaggaggcgaaaggccagagtgtgagcctgaacatacagtatcaccatctggcccccaggtggctctctaacctccaggatcgcaggagctcctgggcctctctggcttccaagggacgcaacaacaaccagtactgggaacagagcgggggaaggaccgggggagagagcgggagcagccgcccgtacgcactggcctctgctggggtactgtccgctgcagccatggccttctgcctcaagaaggactctgatacgaaaggtgatgcacttctggaggctgcaaggaccaacagctcgcaagatgtggcaaggttgctgggtgagggggtggagcctaaccaccggcaccgtctgggctggacctctctcatggtggcagctatgaaccgccagcacagcgtggtgaaggttctgctggaggctggggctgatcctaacgcaggagacgacttcaacaacgtctatgacacatccagagagaagggcattcactcactggaagtgttggtttccagggaggatgaatttagtagcaggctgagtagcagggctggtttccgtggttgcacagccctacactacgcaacgctggccgacgacccacacgctgtacgcatgctgctggagaaaggtgccaaccccctgcagaccaatgccttaggacacacagccagagcctacgccaaggagggagagttacacacactactgctggagtgggagggcaagttccaggaagctcaagctaagagagaggcagaggagagaagacgtttccctctggagaaacgactgatggagcacatcatcggtcaggagggggccatcaacactgtggcttcagcgatcaggaggaaggagaatggctggtatgacgaagaacatcccctcgtcttcctcttcctcggctcctctggaatcggtaagactgagctggccaaacaggtggctcgttatatgcacaaggacctgaaaaagggattcatccgcgtggacatgtctgagttccaggagaagcacgaggtggctaaattcataggttctcctccaggttatgttggtcatgaagagggaggtcagctgactaaacagttgaaggcgtatcccaatgctgtggttctgtttgacgaggtggacaaggcccacccagacgtactgaccatcatgctacagctgttcgatgagggccgtcttacagatgggaaggggaagaccattgagtgtaaggacgccatcttcatcatgacctcgaacgtggccagtgatgacatcgctcagcatgcattgcagctccgccaggaggtccaggagctcagccgcaggaaactggtcgacaacctggacgatgttcaaaagagggatgatgtcaccatctccaggcagtttaaggacgctgtaattcgccctattctgaagcatctcgctgacaccacagattggttgagccactattctgaaggcccatttccggagggatgagtttctggggcggatcaatgagattgtctacttcctgccgttctgcccctctgaactgcagcagcttgtcagcaaagagctcaacttctgggccaagaaggcgaaacagaggcatgacatcactctgctgtgggaccgccctgttctggacctgctggctggaggttacaacctgcactacggagcccgttccatcaaacatgag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]