2024-11-15 19:23:54, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_009699446 4451 bp RNA linear MAM 04-DEC-2023 DEFINITION PREDICTED: Eubalaena glacialis NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_009699446 VERSION XR_009699446.1 DBLINK BioProject: PRJNA1046016 KEYWORDS RefSeq. SOURCE Eubalaena glacialis (North Atlantic right whale) ORGANISM Eubalaena glacialis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenidae; Eubalaena. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083717) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028564815.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/01/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4451 /organism="Eubalaena glacialis" /mol_type="transcribed RNA" /isolate="mEubGla1" /db_xref="taxon:27606" /chromosome="2" /sex="male" /tissue_type="kidney" /dev_stage="calf" /geo_loc_name="USA: Amelia Island, Florida" /lat_lon="30.591667 N 81.441667 W" /collection_date="2020-03-08" /collected_by="Teri Rowles, Bob Bonde" gene 1..4451 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:133084479" misc_RNA 1..4451 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:133084479" ORIGIN
ggcggtgaggcctgtgatcatggcgctgttccccgcctttgcgggtgttagtgaggcgcccgagagcgggagccccaggaaagaattagactggctgagcaacccaagcttttgtgttggaaccgtaacatctctgggccaacaaactgaagaggccacagcctttgtttctgaagagtcgctactgaccaggagtcctctgaattcagagccttcagatgaaagtgacactaacagaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcagcaccacaagaaaaccaagagaaaacgtgggcagtcaagtagcagtggatctgagtcatatactgattctgaaaaggacagatcttccagaagcatcagagacagtaaaaaggaatcagagaaaccaaatcaagaaaataatgccactgctgatattggacgtcactttgtttggcttgaggacattcaggctctgacgggagaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctttaccgaggagatgtagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtgtatcttgggaggggacttccacagagaagaagcggtcacacaagcatgtcgagcgctactttacaaagaagagtgtgggattaatgaacattgacggagttgccattagcagtaaaactgagcctccctcatcggagtcgatctcatttatcccagtgaagggtgcagaggatgtggtttcccctgttacaacctggttgaaccctctggggatttatgatgaagccaccacgcagtggttacaaggccggggtccttcagagcaagaatccaagcagccagattcacagcccaacagagagagcgtgcttctcaaggccaaggtggaggagtttaacaggagggtatgggagaatcctcgggatgttcagctgtggatggcatttgttgcttttcaggacgaggtcatgagaagtccgggcctgtatgccattgaggaaggagagcaggaaaagcggaagcggtccctgaggctggttctggagaagaagctggccattctggaacgggccgtggaaagcaacccgagcagcgtggatctgaaactcgccaagctgcagctctgcaccgagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaacaatacagccctttggcagaaataccttttattttgccagagccagtttagcaccttttccatatcaaaaattcagagtctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttgtcccaccctgagctgcctggcaccgaggaggacatgtttgccctctttcttcagcagtgccactttctgcggcaggctggtcactccgagaaggccgtctctctgttccaggcaatggttgacttcaccttcttcaaacccgacagtgtgaaagacctgcctaccaaaggacaggtagaattctttgagcccttttgggacagtggagagcccagggctggagagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcgtcagcccagatgatgacgacgatgaaccggaagacgacgaccaggaaattaaagataagactctgcccaggtggcagatctggcttgctgctgagcggtcccgagaccacagacaatggcggccgtggcgccctgagaagaccaagaagcaggcggaggaagactgtgaggacccagagagacaggtgttgtttgatgatattggacagtctctgatccgactttccagcccggatcttcagtttcggctgattgcagcctttctgcagttcttgggtgtgccttccggcttcagccctccggcctcctgcctctatctggccatggatgagaacagcatctttgacaatggactttatgatgaaaagcccttgacttttctcaacctttcattttccggcgtcagctgtgtcggacgcacagaccaactgagttgccggcactggaccaggggtcacagtcgagagggcgaggagttcatccgcagcatcttccacctcgtgatgcctttgttttcaggcaaggagaggtctcagctctgcttctcctggttacagtacgagattgcaaaggtcgtttggtgtctgcacactaaaaacaagaagagattaaaatcacaaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagacaaccgcaacaatttttgcctctggaagcagtatgcgcatctggagtggttgcttggcaacacagaggatgccagaaaagttttcgatacagcactcggcatagcagggagcagagaactgaaggaccatgagctgtgtgagctcggtctcctctacgccgagctggaggtggagctgttgccggacgtgaggggggccgccccagcccgagccattcacgtattgaccagactgaccgagaatggggcctacgggccctacactgggcaagtctcggccgttcacattttgaaagctcggaaggcttatgaacacgcgctgcaggactgtttgggggagagctgtgtctccgatccagctcccgccgattcctttagccgcctgattagcctggttaaatgctttatgctcttccagtatttgaccatagggatcgacgctgctgtgcggatatatgagcaggtatttgcaaaacaccaggtctctgtttccgcagagggccctggtctggagggcagtgccagcccccagagcctgagcagcgtcctcgaggccgtcaccctgacacacacgagcctgctcaggttccacatgaaagtcgccgtctacccactggctcctctgcgagaggctctctcggaggctttaaagttgtatccgggcaaccaggttctttggaggtcatatgtacagattcagaataagtcccacagtgccagtaagaccagaagattcttcgatgcgatcaccaggtctgccaaacccttggagccgtggttgtttgcaattgaagctgagaaaatgaggaaaagactagtggaaaccgtgcagagggtagacggtagagaggtccacgccaccattcccgagactggcctgacgcatcggatcagagccctgtttgaaaatgcgatgcggagtgactacggcagccagtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaattgtccttgggcaaaggtgctgtacctggatgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggagcttctgcttgaggactagagaccaggaggggagtggggcgtgcctccgaggcctcggcgcctgccccgtgggagccaggagacaccagaagagacgctgctgttgaacaactgccaccagctctgggggtgtgacggggcagcaggtattgaagtctgcagtccttttggtcagccagcttccttaacacccggatccaccgacttgctgctgctgagaggccggtgtggagggcccagaaacaggattcagtgtttgagaaagagcacgctttattgggaagagagcgctgcacgcgaccaacatacgaagagggctggatgggcatcctacacatcatgctcaaaaggtactcggggtgctgcgctagtgaaggtcaaccggaacatggactcctgggcaacttccccaacctcacacctctgagggggtcgacacacttccaaccttttcctggaaggcaactgtggtccactagagatagagcccctcaggggtgccttcttgttttttataaagaacattttctttagactttttgaagtcttcatttgttactttcatcctacgttctctcaaggccatcagaccagcttccgtacagattgcctgtaaggagaaacagtgtgttcagaaagtgaaatactttttattccagcaattcagagagtgctgttttgaaatctggtgtaggcacccaacctaaacacgaagttctcacaccatctgggaatgattagattttttaaatgttttaaacattctaattattttcttaaaggacctgaggtggcttaaactgggaatatttcactaaggaagaggactggctcaggttctaacccgccgtgtggcctggcaggtcaggaagttctcacaaccctgctttcattaaagggagtgatcttcctaagaaatacataaaattattctagaaatttagagcccaaat
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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