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2024-11-15 19:28:11, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_008659362           12892 bp    RNA     linear   PRI 17-JUL-2024
DEFINITION  PREDICTED: Symphalangus syndactylus NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X4,
            misc_RNA.
ACCESSION   XR_008659362
VERSION     XR_008659362.2
DBLINK      BioProject: PRJNA946760
KEYWORDS    RefSeq.
SOURCE      Symphalangus syndactylus (siamang)
  ORGANISM  Symphalangus syndactylus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hylobatidae; Symphalangus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_072430) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 6, 2024 this sequence version replaced XR_008659362.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_028878055.3-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/16/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12892
                     /organism="Symphalangus syndactylus"
                     /mol_type="transcribed RNA"
                     /isolate="Jambi"
                     /db_xref="taxon:9590"
                     /chromosome="8"
                     /sex="male"
                     /cell_line="Jambi"
                     /cell_type="lymphoblastoid"
                     /tissue_type="blood"
     gene            1..12892
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 6 Proteins"
                     /db_xref="GeneID:129487545"
     misc_RNA        1..12892
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X4"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:129487545"
ORIGIN      
tccgcttcggggtcaagccccagagagcgccgcgaaaaccacatttcccagagtgcaccgcgacggcaggggtcctcagacaggctctcgcgcgccggcgtcatctttataaagaagaacggcggtgcggcctgtggtcatggcgctgttcccagcctttgcggcgcttagtgaggctcccgatggcgggagctccaggaaagagttagactggctgagcaacccaagcttttgtgtcggatccataacgtccctgagccaacaaactgaagcagccccagcccatgtttctgaagggccaccgctgacgaggagtcatctgaaatcagagtcttcagatgaaagtgacactaacaaaaagctcaaacaaacaagcagaaaaaagaagaaagagaaaaagaaaaaaaggaagcatcagcatcataagaaaacaaagaggaagcatgggccgtcgagtagcagcaggtctgagacagacactgattctgaaaaggacagaccttccagaggcgtcagaggcagtaaaaaggaatctgagaaaccgaatcaaggaaataatgctgcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacaggagaaaccttcagaacagataagaaaccagatcctgcgaactgggagtacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtgggattaatgaacattgatggagttgccattagcagtaaaactgaacctcccttatctgagcccatctcctttataccagtgaaggacttggaagatgcggctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacagtggctacaaggacagggtcctccagagcaggaatcaaagcagccagatgcacagccagacagcgagagtgcggctctcaaggccaaggtggaggagtttaacaggagagtgcgggagaatcctcgggatacgcagctgtggatggcattcgttgcttttcaggacgaggtcatgaaaagtcctggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctcattctggagaagaagctggccattctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttgcatcccaataatacagccctttggcagaaataccttttattttgccagagccagtttagtaccttttcgatatcaaaaattcacagcctttatggaaaatgcttgagcactttgtctgctgttaaggacggcagcatcttatctcaccctgcgttgcctggcacggaagaggccatgtttgcactctttcttcagcagtgccactttctgcggcaggctggccactctgagaaggccgtctcattgttccaggccatggtggacttcaccttcttcaaacccgacagcgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggagaagggagcccgaggctggaaggcgtggatgcaccagcaggaacgaggtggctgggtggtcatcaacccagatgaggatgacgatgaaccagaagaggacgaccaggaaataaaagataagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagatcagaggcactggcggccctggcgccctgataagaccaagaagcaaactgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattgggcagtctttgatcagactttccagccacgatcttcagttccagctggtggaggccttcctgcagttcttgggtgtgccttctggctttactcctccagcttcctgtctttatctggccatggatgagaacagcatctttgataatgaactttatgatgaaaagcccttgacttttttcaacccttcgttttctggggctagctgtgttggtcgcttggataggttaggctgtcctcgctggaccaggagtcagaaccgagagggcgaggagttcatccgcaatgtcttccaccttgtcatgcccttgttttcaggcaaagagaagtcccagctctgcttctcctggttacagtatgagattgcaaaggtcatttggtgcctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaactgcaacaacttttgcctgtggaagcagtatgcacatctggagtggttgcttggcaacacagaggatgccagaaaagtttttgacacagcactcggcatggcaggaagcagagaactgaaagactctgacctctgtgagctcagtctgctctatgctgagctggaggtggagctgtcgccagaagtgagaggggccaccacagcccgagctgttcacatattaaccaagctgactgagagcagcccctatgggccctacactggacaggtgttggctgttcacattttgaaagcgcgaaaggcttatgagcacgcgctgcaggactgcttgggtgacagctgtgtctctgatccagctcccaccgattcctgtagccgcctaattagcctggctaaatgcttcatgctcttccagtatttgaccatagggattgatgctgctgtgcggatatacgaacaggtgtttgcaaaactgaacagttctgttttcccagaaggctctggcgaggggtacagtgccagctcccagagttggaccagtgttctcgaagccatcacactgatgcacacgagcctgctgagattccacatgaaagtgagtgtttacccactggcccctctgcgagaggcactctcacaggctttaaagttgtatccgggcaaccaggttctttggaggtcctatgtacagattcagaataagtcccacagtgccagcaagaccaggagattttttgacacaatcacgaggtctgccaaacccttggagccttggttgtttgcaattgaagctgagaaactgaggaagagactggtggaaactgtccagaggttagacggtagagagatccatgccacaattcctgagaccggcttaatgcatcggatccaagccctgtttgaaaatgccctgtgcagcgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttctggtttccttgggaaataaagaaagaagcaaaggtatattctacaaagcacttcagaattgtccttgggcaaaggtgttgtacctggatgctgtggagtacttcccccatgagatgcaggagatcctggacctgatgactgagaaggagctccgggtgcgcctgccgctggaggagctggagctgctgctggaggattagagagcagcggggaaatgggctgtgcctgcgaggctaagttgcccaccctgcggagctaggaggcgcgagcggagaacggaaacaaccctcaacttgaggaagttgagagctcgactccaaggtggacttgctccccctccccaagagctgactggcttgaactgtcatgagttcctggctgcccacaatgagggaccttctccacccttggcctctgcgcggggcggacatcagccagatacatcacagacctgattgggggcagggagtaaggaagtccaggaccaaaccatgctccccatgacggcagctggcgcctcagtccccatctgactcatgtttcttctcatctggttcaggacttagaagggcatggcctctgatcagctggtcccctcaaaccccagtggcaacctgtcccttgagagccaggaatggctcttagcagtgggcagtgagcccccgagaggataaagcggctgctcgaacagattgcgagcacattacttgctgcatgggaagaggcttaaaacaaatcaaagattctttaagggcattttacagaaaacaagatgtcgagagcatcactgttatttaaaagcctgtttgaggccgggcgcggtggctcacgtctataatcccagcactttcggaggctgaggcgcatggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaacccccgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctgctcggaaggctaaggcaggagaatggtgtgaacctgggaggcagagcttgcaatgagccaagatcatgccactgcactccagcctgggcgacacagcgagactccgtctccaaaataaaaaaaaaaagcctgtttgagattgctgacatgaagttctgaaagacgactacgtgcctcccaagactaactgtcagctcagagggctgagaagggggttctgagctcaagtcaaacagtggctcatgcgtttcatcagtaacgctcgtcatttccccaaaggagtcactgatcacgtcagaccacaggggtcggcccacctcaggtttgggacagtgttctttcctggaatgaagcagtggcaatgcctctggcacaggattgctgggcctgcgggaggccgggaggtacctctgtgctgtgtccccagttggaggaggcagctactacttgtaaggcacgcatattattttgcattggaaaagtgaagatgggcttgctgcagagggagtgatggcagagttcaccttgaatggttctactgaggaagggctccaaagagccagtgggttttccgcaggcagacggggctctccctgtctggctcaccagtgcaggaagccagggaagaaattactgtgggaattctgttatttcacaagcacttcatccctgcatccctgcacttggcaccgcaggcctcagtgaccagctgccgaaacggtaatttcagcattttggtcaataagcaaactggagaagcagctggggtggggtgcagttcagcccgctaccctgacactctaggccctggcatttgctttagctgcttttgtagaattgacatgagggagactgtccctctagaggaaaaggctcagctattaccaatgaggaaaaggcaatactgatgtgctagggttttttgttttttttaatctcaaacttacggaaaagatgcaagtacgttacaaagaattttgtttcctgaaccatgtgagtcagttgctgatagtctgctacccgtccacgatacagacactgaacaggaagtcagcatggacacagtactcccagcgggtcctcaggcctggtcatgtcctctaggaaaaggatccagttcaggagcaggagctgcacttggttgtcatctctttggtctccttctgattggaagctttttgacttccaagacgtggatacttttgaagtgttctgaatttgtagaatgttcctcagtttgtgtttgcctggtgtttcctcatcactggattcaggctaagcatctttggcaggagtgtgacagcactgacactcttgggtggcacgtactttcaaagtgcccgttactgatgtgcattttgaccacatggtgaagacagtgtctgctgggcctctccagtgtgactttccctttctaactgaacagtgttttgtgggagactctcaaaatctgtaagtaccccttcctcagcaaactttcagatcaattcgtatgtattggtgtgtgtgtgcagttccctatttaaagggctgtactgtattccattaacagttaactgttaggatgctcagattgtcccaggtttggccagtggaagcccctacacataggctttggtgtcctttggacgtgtccctatcattccttgagcactcccttgctttctggcaaaacagattttgggttcatcttgtcctttccctgcctagccctgaaatcattcctcactccttttagtgttagtggagaataatacttaccagcaaaggtctgggtctaggggtgctcactgcagttggggtgtcactgttcccaggcgctcccagtggacagacgtcgttctcgttttcttctttctgtgtctaactcctcagagaaacctggctcccaccgtcctgtttacctacctgactgcctccatacataagcagcctccctcccctgccacctccctcccctgccacctccctcccctgccacctccttcccctgccaccactccgtccctgcagatgccttcctcacccacttgggctctcatactgcacatcaggctgcccacactgactccccgtatcagaccaccccagccctgcacgtacaccccacacggatgccagccctcaccctgcccatgctgagtccccgtgctgtggtgttcctccacatggacagctccacaccctgcctgggctgacacccgccctccccacaagcaccctgtcctcaccctgcactgggccacccccacgtgtggatgtcctcggtggtaggcagagtggcgcccctaaagatggccacaccctaagccctggaacatgtgactgttacatggcaaaaggaactttgcagataaaaattaagattgtaaactttaaaacagggaaattatcctggattatctgcacaggtccaatgtaatcaatcacaagggtccataagagtagaaaaggcaggcagaaagaagcatcagtgggagagaaggactgggcctgctgctgctggtggaagatgaagggccacgagtcaggagggagggtggccttcacagactggcaaaggcctcagctggcagccagcaaggaaatgctgaccttggccggccccacaactccaggaaactaaattctgccaacaaccctcagcaaggaagcagaatctcccttagagacgccagagaacggtcctgccaacagcaagactttagcctggagacacccgtgttggacttctgacctacagaactgagataaaattgtggtttttatttattttttattcttttttgagacagagtcttgttgtgtcgcccaggctggagtgcagtgacgcaatcttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcctgactagctgggactacaggcacccgccaccacgcacggctaatttttgtatttttagtaaagacggggtttcaccatgttggccaggctagcctcgaactcctgaccttgtgatccgcctgcctcagcttcccaaagtgctgggattacaagcgtgagccaccatgcctggccaaattgtgctgtttttaaacaaagcctgtggtaacttgttatggtattaacagaaaactaatacacactcctcattcaatgtgggcacctacaacccatgccaggccacctgtcaagggaacgcttaccgtgatctgccccacttagtagctttaggcctgatttgttgagaaagagaaacgacagaaatagatggagaaagggaagggtaagttccgacatgtttctgaacaccttgaaagggatgaggtttctgagcccaagaacaagggcttttgagatatctctaggaatcctcagtctcttgggaacaccagtagttattttctgccctcagagtgctgagaacatgcatggtccacaaaacttccaaaaaggaaagctgtacttcctttggaagcaacagccacattaactcagcctttattatttaaacaacgaatatccctggctctgtggtagtaaccatttcccactgtaattactgttgaacgccagctctgggggtatgatgcggggaacgcatagtgaggtccacactccttgtgaccgcagcctgagttcctgtccaaaggcttccctgcagctgggtccacccacaggctgctgctgagcggtaggtgtgtgtgaagactgcagaaacaggaagtgtttgtgaaagagcacgctttattgggaagcagactgctgcacagtgaccaacagacaggccacccaatgggcacttacacatcgtactccaaaagacacaggatgttttgctaataaaaatcaatgagaacagggattcctctgggcaactcccccaacctcatccctttcagggattgagaaatctcccaaccattttcctgatggcagccatggttcattagagatacagcccctcaggggtgccttcctgtttcttataaagaacattttctttagattttttgaagtcttcatttgttactttcattctacgttctcttaaggccatcagaccagcttctgtacagattgcctgtaagaaacaacagtgtgttcaggaagtgaaatactcatttttattctaacaaggaattccaaaaaacctagtctgaggccaggtgcggtggctcacacctgtaatcccagcactctgggaggccgaggcaggtggatcgcctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattagccagggacggtggcaggcacctgtaatcctagctactcaggaggctgaggcaggagaattgcttgaacccgggaagtggaggttgcagtgagccgagatcaccccactgcactctagcctgggcaacaagagcaaaactatctcaaaaaaaaaagtctattctgaagtaaagcatgagacacctagactaaacacaaactgtttatttgggaaagatttgattttttaaaaaaatgttttaagcatcctattttctgaaaggatgcgaaatggcttaaactgggagttactgtaactaagaagactggcccaagggtcagggctgtgggttctagttttggctcaggttctaacaagctatgtggcttggcagatcaataaattcttacaccaccactttcgttaaagagaataatattcctaggaaataaacaaaattatgccctgaaacttagaggcaattgacagtatatgtctatttcatttacctgtagtcataaaagaacatgtattctggttagatactgtaagtggcagtatctatactatggaataatactacagagtatagcatttatttcaatatatttaatttctcagtaattacttgcccaaagtaaaagaaaacaataacccatgttacataggttgctgttactgttttaggcctgatctgtttagaaaggaaagagaaatgaaggaaatagatagagaaggacagcaaacaaacatattacgtgggttattgttttctttttcttttggccagtaattactgtggcaaaaaacacaatcctggcacagaagtttgtttggtgatggccatcaggtcatttacttcaaatggttcgggtgaaaaagttttgtgtacagaaagagaaaaagcaaatgggtaaaatgttaactcttggcaaatcactgtgctattgctgcaacttttttgaaggcttgaaaattgtcagtttttatcttaaaaataaagttttaagatcttccaatttttaaaaaagaagatagattttactcgccaacagagacatctagttctctaggactaactgccaatgatccgtgggctcagggcaggtgctggcctagaaaggcactgcttttgctgtccctacctaaccacggcacttatgcctgacgaaaacccagctctttccaggggaagcaggttgaacccatattcaacgctgccaggccttgctgtaaattctggtcagccgggaggaaatgtctgaactcatgtacatttgtcataaaaccaagaagtataatctggtacaaccttccagaacacaaattgggacatgaatgcagtgggtgcttggtccccactctgcggctctggggagagttctcccaggacatacccttccccgacctgggactaagcagctacatttgacacaccttgagaaagtcacctgggcctaaggcagcttagtaccagagactcagccttgtggctccaggtgatttagggtcattcactgcataaaatgatgcattaaaaatgacttcaaataacaagcacatataccatttggatataatcgtaaaccactatgatgattaaaatatagacacccacctgtccaggccaaccaccatcccaagagcacatatagactctttcctgattgacagccacattcccagaaataagctgacacggctaggctctcaccttgatgtcagcaccagagaggtcatctttagccatgatcaagtcgtccagggttacatcatcagccagtgtcatcctgcttgtgtgaatctgaaagatgcgcttcttcgtcttttcatcaggcagggggaactcaatcttcctgtcaatgcggcctgcaggtacgaaaagattttaagtcacactaccatccaaacccaggcttggccatggctcagaggcctcagcccatctccttaaatatgaagtttcagtcagacagtattctgtgggaaggatgtccaaattttaaaaagtaaacatacatctttgtaagtttgtaaatttctacatttgaattctcttcatttaaaagaaactctctgctttggtaccttcagaaataaatgaaaggagcaattcctgagtgaaactggacagacctattgtgttaaaaacattacaaaagacagcaaacaaatcactgtttcttctgatgctacctgaatgtaaaaaggacaaatcctaccatcacatgaattatttcttccagaaaaagcagcaagttcttgaggctaaaaagggaatattatggaaaagaaaagatcaagacataagactggaattcaaagggccaaggtgcacagaccatatcatgctctgttttaactctcatctcaaggggacctatttttttttaaattatcctaagtttcactgcagtatttgcttttttatgtattattttataggcctcccaaagcacacttaaacacaaatacataaacacattaatctccatgatgaaacaaaagcaaatttaacctggtctgataagtgctggatccaaagtttctattcggtttgtggccatgataactttcacatctcccctagaatcaaatccatccaactggttcagcagttccaacattgttcgctgaatttctctctcaccaccagaattggagtcatatctttggaaaaaaaaggaaggaatgaagacccaactgatcgcctgctcaaggggaattacagcaaagacctcattgtgacaaaacaccttacaaacattcctgtttcaactcacatggcactccctcaattatgctcagaaaaaaacacattcagcaccccttgccatggtctgaatgtatttccccaaatttatgtgttgaaacttaatccctactgggtggttaagagatgaggccttttggaaagggctaaaggcatgaggcagagccttatacagcatgagttccttataaaaagagaaaaaggccttatacagcatgtattccttataaaaatgctgcagggaactagcgtaggccctttttgctcttccatttgtccccttagcatttgtcccctctacagaataggtgccatctcggaagcagagagcagccctcactagacgtcaatgccagtgccttgatcttgggcttctcagcctccggaactgtgggaaatacatttctattctttatacaaataccagtcctaaggtattttgtttagcagcacaaatggactaagacgctccccatcagccaagttacagatcatattttttcatggcagtttctgtgcctgaaattgtatcatttattctgtttccatgtttggtatctgatccctacaacctgtgagctcctccagggcagagactgttgtgctcacaactgtgtccctagagtccagatggtcctggctcagggcgggtgctcaagacatggttattcacaagtggccaacctctctagacattcacagttcctgggcagttgttagctggctcctgggagagcagagcctaaagcatgcatggaaggccacgcatggcaagaactgtggccacagggagagccccctgagatcgttcattttcaagagaagagctatgcggtgttccctctaaacaaggcaaaataagtatgagaaagtctacctttttgtcccaatggcatcaatttcatcaataaacacgatggacggtgcatgttcttcagcaactcgaaataattcccgtacgagtttgggcccatcacctaggtacttctgaataagttcagagccaaccactctcaagaaagtggctgaggtttggtttgctactgctttggctaacaaggttttacctattttagatgaaaaaagataaaaaaaaaaagacacctgaagtgccgtttttaacttaaaaactcgtatcattaccaccttaaatggacaccaaaaacaggtgtgccctcatgctaaggcatgccaccaattcaagtgtcacgacatttcattctcctaagtagataagaggacatttagaaaaatctactaacatgtttggattatccttagctattttcctgaatttatgataacgtcagaaaatactttttacttggttattttccaaccctgacccagtttcccctgaagagctgcgaactataattacctgtacgaagaattgcttcgtaccagcaatgaaataaatctcattttttttc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]