2025-04-22 02:07:43, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XR_007213257 2285 bp RNA linear ROD 19-MAY-2022 DEFINITION PREDICTED: Perognathus longimembris pacificus dicer 1, ribonuclease III (Dicer1), transcript variant X5, misc_RNA. ACCESSION XR_007213257 VERSION XR_007213257.1 DBLINK BioProject: PRJNA837248 KEYWORDS RefSeq. SOURCE Perognathus longimembris pacificus (Pacific pocket mouse) ORGANISM Perognathus longimembris pacificus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Perognathinae; Perognathus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_063174) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Perognathus longimembris pacificus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2285 /organism="Perognathus longimembris pacificus" /mol_type="transcribed RNA" /isolate="PPM17" /sub_species="pacificus" /db_xref="taxon:214514" /chromosome="14" /sex="male" /cell_line="21356" /cell_type="fibroblast" /tissue_type="trachea" /dev_stage="adult" /geo_loc_name="USA: Santa Margarita" /collection_date="2019" /collected_by="SDZWA" gene 1..2285 /gene="Dicer1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:125363638" misc_RNA 1..2285 /gene="Dicer1" /product="dicer 1, ribonuclease III, transcript variant X5" /db_xref="GeneID:125363638" ORIGIN
ctccaagcgcgtgtgcgccgtcgccgcgggccgagcgcgggctgcgggcgagccgggcgctgcgcagtctccgcaggctccggcgggaggggtcgaggcgcggcgcggcgcggcgcgggctgctcccgggcccaggtgaatggagtaacctgacagcgggagcgtggcgacggcgagcggcaggaaatggcggcggcggcggcggcgccgggcggcaccgggaggcctgggctgtgacgcgcgcgccggagcggggtccggatggttctggaaggcccgcggcgctcgtgctgcaggttacctagggtatgaattaatacagacttggaaactctgaaagaacttagaatcagcattttgagagcagaagcttgggcatgctgtgattttccaataatctgctatcacaatgtcaaaatgcagttcagacaacagcaacacagagccctcaaaccctaaaacgtaagctgtgctagaacaaaaatgcaatgaaagaaacactggatgaatgaaaagccctgctttgcaacccctcagcatggcaggcctgcagctcatgacccctgcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataacatttatacgccaagaaaatatcaggttgaactgctcgaagcagctctggatcacaataccatcgtgtgtctaaacactggctcagggaagacatttatcgcagtactactcactaaagagctgtcctatcagatcaggggagacttcaaccgaaaaggaaaaaggactgtgttcttggtcaactctgcaaaccaggttgctcagcaagtgtcagctgtcagaactcactcagatctcaaggttggggaatactcaaacctagaagtaattgcatcttggacaaaagagagatggaaccaagagtttactaagcaccaggttctcattatgacatgctacgttgctttgaatgttttgaaaaatggttacttgtcactgtcagacattaaccttttggtgtttgatgagtgtcatctggcaattctagatcacccataccgagaaatcatgaagctctgtgaaaattgtccatcatgtcctcgcattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattagaagaaaagattcagaaactggagaaaattcttaagagtaatgctgagacggcaactgacctggtggtcttagacaggtacacttcccagccatgcgagatcgttgtagattgcggaccgttcaccgatcgaagtgggctctatgacagactgctcaaggaactagaagaagcacttaattttatcaatgactgtaatatatctgtacattcaaaagaaagagattctactttaatttcaaaacagatactgtcagactgccgcgaagtgctggtggttctgggaccctggtgtgcagataaagtggctgggatgatggtaagagagcttcagaagtatatcaaacatgaacaggaagaactgcaccggaaattcttgctgtttacagacactttcctgaggaaaatccatgcactgtgtgaagagcacttctcacctgcctcccttgacctgaaattcgtaacccctaaagtaataaaactgcttgagatcttgcgcaaatataaaccatatgagcggcagcagtttgaaagtgttgagtggtataataataggaatcaggataattacgtttcttggagtgactccgaggatgacgatgaagatgaagaaattgaagaaaaagaaaagccagagactaattttccttctccatttaccaatattctctgtggaattatttttgtggagagaagatacacagcagttgtcctaaacagattgataaaggaagctggcaaacaggatccagagctggcttatatcagcagcaactttataactggacatggcattggaaagaatcagcctcgtaacaaacagatggaagcagagttcagaaaacaggaagagaatatcgatcctatgttcagtctaaaggaagagcaagggccccgatctctaattacataatgttagcagacacagacaaaatcaaaagttttgaagaagacctgaaaacctacaaagctattgaaaagattttgagaaacaagtgttccaagtcagtggatactggcgagaatgatgtggaccccattgtggacgatgatgacattttcccaccgtacgtgctgaggcctgatgacgggggcccgagggtcacaatcaacacagccat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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