2025-04-22 02:04:34, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XR_006926681 6247 bp RNA linear VRT 18-FEB-2022 DEFINITION PREDICTED: Silurus meridionalis dicer 1, ribonuclease type III (dicer1), transcript variant X2, misc_RNA. ACCESSION XR_006926681 VERSION XR_006926681.1 DBLINK BioProject: PRJNA807317 KEYWORDS RefSeq. SOURCE Silurus meridionalis (Silurus soldatovi meridionalis) ORGANISM Silurus meridionalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Siluridae; Silurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060891) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Silurus meridionalis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6247 /organism="Silurus meridionalis" /mol_type="transcribed RNA" /isolate="SWU-2019-XX" /db_xref="taxon:175797" /chromosome="8" /sex="female" /tissue_type="muscle" /dev_stage="adult" gene 1..6247 /gene="dicer1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:124390025" misc_RNA 1..6247 /gene="dicer1" /product="dicer 1, ribonuclease type III, transcript variant X2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:124390025" ORIGIN
cgctcgcttgtgcacgctcgcgtaatcatgcgcgctcgtccccgtatcagcagtaagaggagggaatggagtaaagagcaggagtgaagtgattcagtgtacagcgctaaagccacacaatacacaccaccgattctgcgggtgttgccgagatgagtgaggagcgctgatggtgacgatgaagcccagaataagtgctgcctggatccacagcttcgtgccaaacacacacccttgagctttcgaagagctggacgaaaaatgagataaacactggacgatcggagtctcagcatggcaggactgcagctggtgacccctgcctcctctcccgtggggcctttcttcggcctgccgtggcagcaggaagctattcacgacaacatatacaccccaagaaaatatcaggttgaacttctcgaagcagctcttgaacacaacactatagtctgcttgaacacaggctcagggaagacgtttatcgcagtacttcttattaaagagctctcccaccaaatccgccaggacgatgggaggaggaccgtgttcctggtcaatacagcttcatccgtggttcagcaagcctccactgtgagaacccattcggatcttcgggttggggaatacgtagagaatccggcatcatggaccgaggacacttgggaagaacagataaaggaaaaccaggtgctcgttatgacctgcaacatctttctgcacatgctgagctttggggtcttgccactctcgcagatcaacctggtcattttcgacgagtgccacctcgcaataacggaccatccctatcaggaaataatgaagaaatgtgaggacagtccaggctccccacgcattcttggtctcaccgcttccattctgaatggcaaatgtgacccctctgacctggaggagaagatccagaacctggagaagatcctcaggtgcaacgccgaaactgccacagatcttgtcgtgctggacaggtatgctacccagcctcgagaagtggtgctggactgcggcccttatcaggacaacagcggtttgtccgagaggctcctgaacgagctggacgacgcgctccatttcctcaacgactacaacttatcgacgcacagggaggatcgagaccccaccttcatctccaaacaggttctgaccgactgtagggccgtcctgaccgtgctcggcccctggtgcgccgacaaagccgccggcatcatggtgcgcgagctgcagaagtacatcaaacacgagcagacggcgctgaaccgcaagttcctgctctttgccgacaccatcctgaggaaactgcacgccctctgcgaggagcacttctccccggcgtcgctcgacctcaagttcgtcacccccaaagtgatcaagctgttggagatcctgcacgagtataaaccgttcgagaggcagcagttcgagagcgtcgagtggtacaacaaccgcaaccaagacaactacgtctcgtggagcgactcggaggatgatgacgaggacgaggaggtcgaggtgaaggaaaagccagaggccaactttccctctcccttcaccaacatcctctgcggcatcatctttgtggagaggcggtacacggccgtggttttaaataggcttataaaggaagcagggaagcaagatccagagctggcctacatcagcagcaacttcatcaccggccacagcattggcaagaaccagctccgcaacaagcagatggaggtggaattcagaaagcaagaggaagttttgagaaaattccgggcgcacgagaccaacttgctgatcgccaccagtatcgtcgaggaaggcgtggatatcccaaagtgcaatctggtagtcaggttcgacttgcccacagagtaccggtcctatgtgcaatccaaaggccgggcgcgtgctccagtctccaattacatcatgctggctgacagcgaacgcacaaaagccttcgaggaggacctcaagacttacaaggctattgagaagattctcaggaacaagtgttccaagtcggcggagtgtaaagagtatgaggtggagtccatactggatgatgacaacatcctccctccgtattcgttacggtctgacgacggaggccccagggtcaccgtcaacacggcgatcggccatgttaaccgatattgcgcaagacttcccagtgaccctttcactcacctggcacccaagtgtaagactgcagagctgaaaacaggagtgtatcagtccacactctttctgccaatcaactctcccctcagagagcccattactggacccccgatgccctgcgcgaggctcgccgagaaagccgtcgctctcgtgtgctgtgagaaacttcacaaaataggcgagctggatgatcatttaatgccggtgggaaaggagacggtgaaatatgaagaggagctggacttgcacgatgaagaggaaaccagcgtcccaggaaggccaggctccactaagaggaggcagtgctacccaaaagctatcccagaatgcctgcgaggcagttaccctgtgccagagcagtcctactacctgtacgtgattgggatggttctgaccacaccccttccagatgagctcaacttccggcggagaaagctgtacccccccgaggacaccaccagatgcttcggcattctcacagctaaaccgatacctcatattcctcattttcctgtgtatacccgctccggggaagtgaccatctccattgagctgctgaagtcaggctttagcctgagctcgtcgcagctggagctcatcactcgcctgcaccagtacatcttttctcacatcctccgcctggagaaacctgcactggagttcaggcccaccgaggctgactcggcctactgcgttctacctctcaacgtggttgcggattccagcacattggatatggacttcaagttcatggaggatattgaaaaatccgaagcgcgaatcggcattccgaatactcagtacacaaagcagaacccatttattttcagactggaggactaccaggatgctgtcatcattccaaggtaccgtaatttcgaccagccgcatcgcttctacgtagccgacgtatacacggacctcacgcctctcagtaaattcccttcgcccgagtacgagacgttcgccgagtactacaaaaccaagtacaacctggacctgtctaacgtcaaccagccgctattagacgtcgaccacacgtcctccagactgaatcttttaacccctcggcacctgaatcagaaaggcaaggcgctccctctgagcagtgcagagaagaggaaggccaagtgggagagcctgcagaacaaacagattttagttcctgaactgtgtgccattcatccaatccccgcttctctgtggagaaaagccgtgtgccttcccagcatcctctaccggctgcactgcctcctgacagccgaggaacttcgggctcagacggccatcgatgccggagtgggcgttcagagcctgccacccggcttcagatattcgaatctagactttggatggaagaaatccatcgacagcaagtccttcatttcctgccccagcacctgcacagaggatgacgacgacgacgaggaagacgatggcgatgacgatcactgtaaaatcgccgtgagctcagcagtcccagatctcactgcccaggaagacctcagcacagtctcatccgagcccatagagcgtgccgtctcgcaggagaactgtaacgcaccggatgtagcgccagagatgtgcgcccacagagcccagctatcggaagaacccgggagcccgtgcgagcgctccaggaacctcagcaattgcctaaactgccaactagcgagtgacgtatcgccacaaaccactacctcagttccgagcgacgagccccaggacggccatgaatgtaacccagatgggaaatcggatttccccgatggacgcgtgaagaaacctacctcagagcgttggctcgcttgtggaacgccaaccagcaccgaagcaccttctacagcgtcgtcgtcggcacagctccagaccgtagcgttacccggggactgtgtgaaaactctgggccccaacccggggctcatcctgcaggccctgactctctccaacgccagcgatgggtttaatctggagcgtttggagatgctgggcgactcgttcctcaaacacgccatcaccacctacttgttctgcacttatcccgatgcccacgagggacggctctcgtacatgagaagcaagaaggtcagtaattgtaacctgtaccgcctcgggaagaagaaaggtctgcccagtcggatggtagtgtccatcttcgatcccccagtcaactggcttcccccaggctacgtagtgaaccaggacaagagcaccactgacaagtgggactcggatgaggcgaaagaagaccttgccaacggaaaggccgccaaggacgactttgacgacgaggacgacgtggacgacgacgaggacctgatgtggaaggagcccaaggacgaggtgaacgtcgaggacgacttggagtactaccacgagcacatcaggttcattgacaccatgctgatcggctctggcgccttcgggaagaagttccccctcggcgtgttcccgtcagaacccagctgcgactggaaagcgcccaagaaggcaatgtttccctcggacggcaaccacgacgacttcgactacagctcctgggacgccatgtgttacctggacccgagcaaagcagccgaagaggacgagtttgtcgtgggtttctggaacccggccgaggaaaactgcggcgcccaaacggccaaacagtgcatctcgtacgacttgcacaccgagcagtgcatcgcagacaagagcatcgccgactgcgtggaggccctgctcggctgctacctgaccagctgcggagagcgagccgcccagatgttcctctgctcgctcggcctcaaggtgctgcctgtgaagaagaggatcaagtggaatacggatggcggcgacggggaagacgagtacggttggctgcagatcccagcgcgctgcatgttcgagcacccggacgcccagcgcactctcaaccacttgatctcgggctttgagaacttcgaaaagaaaatcaactacgtgttcaaaaacaaggcctatctcctgcaggccttcacgcacgcctcctatcactataacaccatcacagattgctaccagcggctggagttcctcggtgatgcgatactagactacctcataaccaagcacctttacgaagacccgcgccagcactcccccggcgtcctgaccgacctgcgctctgcgctcgtcaacaacaccatctttgcgtcgctcgcggtgaaatacgactaccacaagtacttcaaagccgtgtcgcccgagctgttccacgtcattgatgattttgtgcaatttcagctggaaaagaacgaaatgcaaggaatggactctgagcttcgccgatccgaagaagacgaagagaaagaggaggatattgaagtccccaaagcaatgggggacatcttcgaatcactagccggggcaatttacatggatagcaagatgtcactcgagaccgtttggcaagtgtattatccaatgatgaggccgctgatagagaaattctccgccaacgtccctcgctcgcctgtgcgagagctgctggagatggagccggagacggccaagttcagtccggctgagaggacgtacgatgggaaggttcgcgtgacggtggaggtggtgggaaaggggaagttcaaaggagtcgggcgtagctatcgcatcgctaaatcagcagcggcacggcgcgccctgcgcagcctcaaagctaatcaacctcagaacattactgcatttcagctcccgtcgtgaaaaagaaaagttccagcgagaccaacgccgcgcacttctttatctcagcaccggatgttaacgaagctctcctgtaatcaatgtgaaatcgttcgtaaggtgccacgcccatttttatgacatcatccagcactgcgagcatttggcagatgcccgtatccatacatcaccactggtatacctccagcctaaaccagggatccccaaactatgtaaaaatcccccccgtgccccaaacatttggaacggccctctgaacaatgaaatattttgacaatgtaaagacatgttttactcgtacatctgtatttgttaataaaggttggctttcaaactacaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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