GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-04-22 02:07:44, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XR_006843613            3494 bp    RNA     linear   VRT 03-FEB-2022
DEFINITION  PREDICTED: Scatophagus argus alkaline ceramidase 1 (acer1),
            transcript variant X2, misc_RNA.
ACCESSION   XR_006843613
VERSION     XR_006843613.1
DBLINK      BioProject: PRJNA776026
KEYWORDS    RefSeq.
SOURCE      Scatophagus argus
  ORGANISM  Scatophagus argus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Scatophagidae; Scatophagus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_058498.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Scatophagus argus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3494
                     /organism="Scatophagus argus"
                     /mol_type="transcribed RNA"
                     /isolate="fScaArg1"
                     /db_xref="taxon:75038"
                     /chromosome="6"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="Singapore"
                     /lat_lon="1.3521 N 103.8198 E"
                     /collection_date="2018-08-06"
                     /collected_by="Byrappa Venkatesh"
     gene            1..3494
                     /gene="acer1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:124060647"
     misc_RNA        1..3494
                     /gene="acer1"
                     /product="alkaline ceramidase 1, transcript variant X2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:124060647"
ORIGIN      
cagctcacaacctgctcccccacccactcaaggcgtttacggttttattttgaaagttggccctgatgctgtgcgggcagataggacgcttaagactgtggagaagagaggaagacgtaatggggacatcagcttttctcatcggtgtcttaatggccgggaggcgtgaaaccgctcgttatgatcggtcgtgacgccacaggctcgtgagcgtttcgacgctccgccccgaaaatccacctgctgttgctcttccacctggaacaggagcaacactgacggacaggaggccgggacagcagcaggagcagcggcatgggaggtgttttctccaacgacaaaatggcgacagttttctcctatgagagttcagaaatcgactggtgtgaagacaactacagacactctgaacacgtggtggaatacttcaacactatgagcagttttgttttcttcatcatatctcccatcatgctctacctgctgcacccttacgccaaagagaggaacctggcgattcacttggtctggatcatgatgatatttgtggggatcttctcggcgtacttccacatgacacttagtttcgttggccagatgttggatgagttgtccatcctgtgggtgctggcggtgggatatgccgtctggttcccccgcaggctcttcccttcttttataaaagacaggtccacattttcaagtctcgtcctggtggtcactgtcatcaccacagcgtcgtcatttgtaaagcctacagccaatgcttacgctctgaactgcttcggcctgcatctgctttacgttctggctttggagatgagatgctgcaccgaccagaaggctttgcgactggccaagctgtcggtggctctgtgggtgctcgctatctcctgctggattagtgaccgttttggctgcagcctctggcagaggctaaacttctgttacctgcacggtatctggcacattctgatcgtcatggctgtggcctatggcagcaccttgattgcttacctggatgccaactatgagataccgtactcactgcctggactgcagtactggccctgtgataaatgggctgttggaatacctcacattgtcctgaagggctcccccaagacgcagaaacggtgctaaccaagttaaaagtcatttttaactttggcgaaacacttctgtcgatacgcttccttagtacagcagtaatacactgagcaagactaggcaacaaccaaatctaagtgacaggtaaaggattggttatgccatggatggattaataagcctaatgtgctgagaagcctgagggatcaggaggccccaagggttttatgacttgttctcccatttcgcccattgtcttatttacaacaataataatgaccgtaggcacagagctaatgcaaacccacacaaaataatcccgttatttatcaaattgattatcaaattaaaaatattgcgtatttaaatatgaattttttttcctgataactaagtattagtatttctaatacaaatagcagaacattaggaagtatcattatcactgtttttgatggagaaacttatttgccaattcaataataataataataatccaagtactgttagaaacagctgatgtttagaactgactgatgttgagcttgcgccgagaccccgaacgactgagaaaataagagtgttattgtgtgtattttgaagggtttgtctgtgaagcgtgtgcgtgctttttgtaaatgaattgctgggatgcacatttgattctgcgcaacgtggaacatgtggacatgttttcttgtgatgagaccgatgcttttctagtaacagccgacagtcttgagcgcgacagtttgagtgaggcaccacagtgtgatatattttaaagtcacattgtagtcacacagtcatacaccctgccgccaaaggccagatcgagctgttgaaccaggggaccagtggtcaatgttgatctaaaaggctttaaacaggaaaccttactttgaaatcgttgtatttcgacgcaaactctggtcttgacatgagtgattttcctgctgctaatgtagaggtaccgcagttcgcgacgcacattcattcaagcctcgggtgaagtttgcgtgagctttctgaacaacgtgataggaacgatcacgtaaaggcgtttgggaggatctaccacctttatttttggacacactgcatccactttagcattgttagacctttctttttcttctttttttcttcaaacatcagtcacggttctgactgaataataccaattgtctggctccagtcttccctaaccacagccgtgatctcatcttccagaaagtttcattttctgtttccttttgtccgcgcttactcctgaataaaccctcatgtgtgcttgccgccgttttataaggtgaaaggaaggtgccatcagtttatgttgatttgagttcatagaccgtaggtgctcaagttagtaatgggattcttagagcctgcggatgcaacgttttttaggtttttatgctgggcacccaacaaaatgtaagtacacgtcaggggtttaaatcttagaatgtttttataaatgaggtccctgaagtgagtgtttatggcatgttagaagatgctgtggttgatgacgttattgtattttaatctcaggacatttcttacattttagcaccacatgtctgtgaatgtcggattattctcaggtctgctttttgtctcgttcaggagcacaacaagcacatccaaagcgatttgttttgtatgactgttgcatcactgaactgttaaaagcccttgattttggtgacgttttgagaatattcaggtgccttgtgtctccattcacgtgatctttcctgaaggatacaatagacagaacaatagatgttttactaaatgaaatgcacgcggccactgcagcagggttcaaaagtgacctcctgtggttgctgaaattgctcaaaggtatctagtgcttttagaatctgtgattattagctggtgacagccagatgataggtagttatctttaccttgtcagagcaaatcaaacagtagttttgcagaaaactgttggcctctgtgtccggatcagggttccccaacctctgggtcaggactcccttgcaggggagaggggggatcacatgtaaaatcagaggacttcagataattttcagcaaagccagcatcatggctgtatgataatgtcagtcaggttggttcactgctttggtccaggctgaaatatctcaacaactgctgaggtatttcccataaagttttgtatagaagctcatgaaacctcagagaatgaatcctacacactctggtaatcccacaaccagggcatttattcagtcatagagaaagatatgctttgtgtacattatttattcaaagtcatgtttggattttactgaaagtgtttttggatacgttttaccttccaataaattgctgttatgtat
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]