2025-04-23 14:19:11, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XR_004789923 2301 bp RNA linear VRT 01-APR-2022 DEFINITION PREDICTED: Scophthalmus maximus caseinolytic mitochondrial matrix peptidase chaperone subunit B (clpb), transcript variant X4, misc_RNA. ACCESSION XR_004789923 VERSION XR_004789923.2 DBLINK BioProject: PRJNA821077 KEYWORDS RefSeq. SOURCE Scophthalmus maximus (turbot) ORGANISM Scophthalmus maximus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_061525) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 1, 2022 this sequence version replaced XR_004789923.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Scophthalmus maximus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2301 /organism="Scophthalmus maximus" /mol_type="transcribed RNA" /strain="ysfricsl-2021" /db_xref="taxon:52904" /chromosome="11" /sex="female" /tissue_type="muscle" gene 1..2301 /gene="clpb" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:118299697" misc_RNA 1..2301 /gene="clpb" /product="caseinolytic mitochondrial matrix peptidase chaperone subunit B, transcript variant X4" /db_xref="GeneID:118299697" ORIGIN
gagttctggtgacatccacgctgtgaagtgcttgttttcgttccgtcggctgtggctagccgcatgtaaaccgcgtcgtaacggctttcacacctgacttgacgcgggacacccgggctgtagggtttcctttgtcctccggaactactgtcggactgagggtctcacaccccgcgtattattcggtgagtttatcgtcatgttatcatctgttcccaccaggctaattgcgcgaaggtcgcgcagcctgtcaccgtgcagccgcgtactccagaccagcgcaagtggtgccgcctgcctgggcatccgcgagacaccggcggaggcgaactgcaaccccatcgtttccacctcccgcgtctccaggagggggattctggctgaggagaccactggtaccagtgtcaacccgtcggtgcagtaccaccatctcgcccctagatggctgtccaacctggagaaccgccgcaactcctgggcgtctctggccagcagagggcgcaacagcaaccgttactgggaggagagcgggcagagcggcggaggtgagggccagggagcagatggaggagccggccgggcaggagcggcctctgccggtgtgctatctgctgcagccttggccttctgtctgaagaaagactctgatgacaaaggtgatgctcttctggaggcggcaaggaccaataattttcaagatgtggccaggctcttaaaggaaggggtggacccaaatcaccgccaccgcctcggttggaccgctctcatggtggctgccatgaaccgacagcacgggtctgtagtggtgaaggttctgcttgaagccggtgccgacccaaacactggagatcacttcaacaacgtttacgacacctcaagggagaaaggcatccactccctggaagtgctggtgtccagagaggacgagttcagcagcaggctcagcagcagggctggtttccgaggttgcactgcacttcactacgccacgctggctgatgacccacagaccgtctgcatgatgctggaggctggtgccaaccccctgcagaccaacggtttgggacacacagcgcgggcctatgctaaggagggagaagtgggcacagtactgctggagtgggagggcaaattccaggaggcgcaagctcgacgggaggcagcggaaaggaggaggttccccctggagaggaggctgaaggagtacatcatcggacaggagggggccatcaatactgtggcctcagccatcaggaggaaggagaacggctggtacgatgaagagcatcctctcgtattcctcttcctcggttcatcaggaatcggaaagacagagttggccaaacaggtggcccgctacatgcacaaggacattaaaaagggtttcatccgtatggacatgtccgagttccaggagaaacacgaggtggcaaagttcatcggctctccgccggggtatgtgggacacgaggaagggggtcagctgaccaagctgttgaaggcatgtcccaccgctgtggtcctgttcgatgaggtagacaaggcccatcccgacgtcctcactatcatgctgcagctcttcgatgagggccgtctcacagacggtaaggggaagaccatcgaatgtaaagacgccgtcttcatcatgacatctaatgttgcgagtgacgaaattgcccagcatgcactgcagctccgtcaggaagcggaagtggtcagccgcaggaagttcgccgacaagcttgaggatgtacagaaaagcgacgacatcaaaatcccccgacagtttaaagaatctgtgattcgaccaatcctgaaggctcatttccggagggacgagtttcttgggcggatcaatgaaatcgtatacttcctgccgttctgtcactcagagctgctgcagctggtcagcaaggagctcaacttctgggccaagcaggccaagcagcgccatgacatcactcttcagtgggatcgcccggtgctggacctgttggcgggcggatataatatgcattatggagcgcgctccatcaaacatgagatgaggtctgtgatacatacttgatcaaggaacagcctccaataagcaaagaacaatgtccaatatcagttcatatcttgcttttcgggattgagcagcgaagctcaggacagcaggtggagcggcgggtggtcaaccagttggccgcggcgtacgagcaggagctgctgccgaaaggctgcacgctgcgtctgtccgtccaatcggagggcgaggaggagcagagctcgctctgtctgcggctcgaggtggtggca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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