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2025-04-23 14:19:11, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XR_004789923            2301 bp    RNA     linear   VRT 01-APR-2022
DEFINITION  PREDICTED: Scophthalmus maximus caseinolytic mitochondrial matrix
            peptidase chaperone subunit B (clpb), transcript variant X4,
            misc_RNA.
ACCESSION   XR_004789923
VERSION     XR_004789923.2
DBLINK      BioProject: PRJNA821077
KEYWORDS    RefSeq.
SOURCE      Scophthalmus maximus (turbot)
  ORGANISM  Scophthalmus maximus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei;
            Scophthalmidae; Scophthalmus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_061525) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 1, 2022 this sequence version replaced XR_004789923.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Scophthalmus maximus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Scophthalmus maximus"
                     /mol_type="transcribed RNA"
                     /strain="ysfricsl-2021"
                     /db_xref="taxon:52904"
                     /chromosome="11"
                     /sex="female"
                     /tissue_type="muscle"
     gene            1..2301
                     /gene="clpb"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:118299697"
     misc_RNA        1..2301
                     /gene="clpb"
                     /product="caseinolytic mitochondrial matrix peptidase
                     chaperone subunit B, transcript variant X4"
                     /db_xref="GeneID:118299697"
ORIGIN      
gagttctggtgacatccacgctgtgaagtgcttgttttcgttccgtcggctgtggctagccgcatgtaaaccgcgtcgtaacggctttcacacctgacttgacgcgggacacccgggctgtagggtttcctttgtcctccggaactactgtcggactgagggtctcacaccccgcgtattattcggtgagtttatcgtcatgttatcatctgttcccaccaggctaattgcgcgaaggtcgcgcagcctgtcaccgtgcagccgcgtactccagaccagcgcaagtggtgccgcctgcctgggcatccgcgagacaccggcggaggcgaactgcaaccccatcgtttccacctcccgcgtctccaggagggggattctggctgaggagaccactggtaccagtgtcaacccgtcggtgcagtaccaccatctcgcccctagatggctgtccaacctggagaaccgccgcaactcctgggcgtctctggccagcagagggcgcaacagcaaccgttactgggaggagagcgggcagagcggcggaggtgagggccagggagcagatggaggagccggccgggcaggagcggcctctgccggtgtgctatctgctgcagccttggccttctgtctgaagaaagactctgatgacaaaggtgatgctcttctggaggcggcaaggaccaataattttcaagatgtggccaggctcttaaaggaaggggtggacccaaatcaccgccaccgcctcggttggaccgctctcatggtggctgccatgaaccgacagcacgggtctgtagtggtgaaggttctgcttgaagccggtgccgacccaaacactggagatcacttcaacaacgtttacgacacctcaagggagaaaggcatccactccctggaagtgctggtgtccagagaggacgagttcagcagcaggctcagcagcagggctggtttccgaggttgcactgcacttcactacgccacgctggctgatgacccacagaccgtctgcatgatgctggaggctggtgccaaccccctgcagaccaacggtttgggacacacagcgcgggcctatgctaaggagggagaagtgggcacagtactgctggagtgggagggcaaattccaggaggcgcaagctcgacgggaggcagcggaaaggaggaggttccccctggagaggaggctgaaggagtacatcatcggacaggagggggccatcaatactgtggcctcagccatcaggaggaaggagaacggctggtacgatgaagagcatcctctcgtattcctcttcctcggttcatcaggaatcggaaagacagagttggccaaacaggtggcccgctacatgcacaaggacattaaaaagggtttcatccgtatggacatgtccgagttccaggagaaacacgaggtggcaaagttcatcggctctccgccggggtatgtgggacacgaggaagggggtcagctgaccaagctgttgaaggcatgtcccaccgctgtggtcctgttcgatgaggtagacaaggcccatcccgacgtcctcactatcatgctgcagctcttcgatgagggccgtctcacagacggtaaggggaagaccatcgaatgtaaagacgccgtcttcatcatgacatctaatgttgcgagtgacgaaattgcccagcatgcactgcagctccgtcaggaagcggaagtggtcagccgcaggaagttcgccgacaagcttgaggatgtacagaaaagcgacgacatcaaaatcccccgacagtttaaagaatctgtgattcgaccaatcctgaaggctcatttccggagggacgagtttcttgggcggatcaatgaaatcgtatacttcctgccgttctgtcactcagagctgctgcagctggtcagcaaggagctcaacttctgggccaagcaggccaagcagcgccatgacatcactcttcagtgggatcgcccggtgctggacctgttggcgggcggatataatatgcattatggagcgcgctccatcaaacatgagatgaggtctgtgatacatacttgatcaaggaacagcctccaataagcaaagaacaatgtccaatatcagttcatatcttgcttttcgggattgagcagcgaagctcaggacagcaggtggagcggcgggtggtcaaccagttggccgcggcgtacgagcaggagctgctgccgaaaggctgcacgctgcgtctgtccgtccaatcggagggcgaggaggagcagagctcgctctgtctgcggctcgaggtggtggca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]