2024-11-15 21:43:03, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_002202878 5307 bp RNA linear VRT 08-FEB-2017 DEFINITION PREDICTED: Paralichthys olivaceus testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X2, misc_RNA. ACCESSION XR_002202878 VERSION XR_002202878.1 DBLINK BioProject: PRJNA369269 KEYWORDS RefSeq. SOURCE Paralichthys olivaceus (Japanese flounder) ORGANISM Paralichthys olivaceus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017859657.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Paralichthys olivaceus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5307 /organism="Paralichthys olivaceus" /mol_type="transcribed RNA" /db_xref="taxon:8255" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" /breed="gynogenesis" gene 1..5307 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:109631856" misc_RNA 1..5307 /gene="topaz1" /product="testis and ovary specific PAZ domain containing 1, transcript variant X2" /db_xref="GeneID:109631856" ORIGIN
gctgtgtcagggacgtcgggcggagagcagcagttgtaacgagcctcacgtgaagtttaatggcagcgaggccgagggcgctttatttactgctcccacaggttaattgtcagcatgtttccgtccagcagcagagtgaagctcaaccgagtcgcgttaaaagacgctgtcggccctcagccgcactttccgcggcggaggcgagtctcaaggtcgccgacgaaagtttcagctgagcccgaaaaaccagaagcttctgagggaacctgcgcgagagacggcggcgacgaacccgtccagagctggttagcacggcgaggggacccgggcgatgcgggtgcggaggagccggagcactgctgcggaggaagcgctgaagagacgggaagaagaaaggtcatggagtcatgcagagagagtgatggagaagagttccaaccagagggacccgacactagagacaaaaataggaatacacacccaagccccactggttcacaggggtgttcgagaagaactgtttcagcctccagctgtggtccctgtggggactgtgaatacatttcccctcagaggaagacactggttaagaaggagcaaaaaagcagtagcccagggccagagcagtctgcagatgagttaaaaattaataaaggaaacccagtcactgatgcctctaaggagattgtcacatgggtagaccagtacgcaaaggtaacgctttgtgacatagcccaaaaatgtcacccatacagtcacaattgtggctatgtgttaccggatgttctcaagaacaaggttgtgcattgcttcaaacatgacatgacagatgttcagaaggaccctggaacactttatgaactcattggagcagagatttccagtaagaaaagaacaaagcttgggtatagcatgacaaaagaaagcatgccttccgacgctgattcaaaaaacattagttgcaatgacacagcaagaacttactttatagacaaagagaaaacatgttcggagatgtctggtaacagtcagtcatgtttggaactcacatttgggagctgcagcactcacacttcaactatgaaagaaaactgcgtccatgcgagacattgggttcagatagacaaacccagagaaagtgacgcagcacaaatgtcatcacaactgttctgtccgatgagcgaggcggatgcagatgaaccagagtcatccacctgccagagagtgagggtctatagcagaaaacaacatttttcttgtgcacggacatacatgtcttggcccttctctaacacaagccgtacccttacagcaaatactggcactacagcctgtcaagcagaacacattcatccatcagctagaaacaatagtgactcttcaataaatcaaattcagtcagcttcgctgagcagccaaactaatgatgtgctcccaaatgcacctgcagagacctcttcagacacaacccacaaggtttctcatcacaatgaagaaaaggaggatgtagggtgcattacagccaagagaaatgggaaaagagacagtcatatgtcttcatactcttcagacagcaataacatggagtttgaacctcactttatggacgctcaagaatcatttgccggtctgctctcagattcggccacactttctacctcaagtcagtgtgatagagcgcctggcactgacacagctttggccttaagcatgccagctaatggaccagataccgacagctccacgtctactccatccccctcagtgttaggcctgaatgactgggaaacaaccactactgcgtctcccacatcatttctgttcacacacagtggcttgagcccacattcagtgttcctacttgagaaagtcaaagctgttgagtcggcagaagctcgatctgcatgcacgtcaccggtgtcctcagtcaaacgagttatcagcgctgtagaaaaaccattgtttcacagtgaagaaactcaaatgacttcatgtccttcacctacatctccatttttttctttgcacaactgtgactcctgtcattcatgtcaatccttcctcctcctacctcaaggtaggcaagagggtgataaagagaaagaaattctcactgacaggagtccaccaaaactggagccatattataaccaaagccccatgaaccacaactatgctgttacttttggaagaggcagttcgtcattacaaaacattaccaaggaaaagtgtggcgaaactaattcaaatgaattcctgcttccaccacttctttctcctgtcgcttcaccgcaatggcacttgctcagaagctccttgccccagagacaatgctgtttagaggaggagatgaaaaatgacaacagtaaacacacaacactaccaggatatcacatgccacagattggtgaaggtgatcatcagaatggcggggagaattttgaccgtcatcaacatgaaggacacgcaaatgaggaaatggagggagcctcatcaaaatttaaaactatgaatgacgatttcagagagggaagccaggataacattgattatgaagatgacgtggaacagtctgacagatctttgtcagaaccctgctcttctcccagcagcgatgaaggatccccatctgaaacggtgggcagtgagaggcataaaactgaagcggaagcagctggtggtactgacagcagccttcttgatgagttcaccgcttatgaacgtgatatcttgcttgtcaatgtgatccctgacccagagctgtttgaaaatctacctgaggaaagtctgctaaagttgggtcctacaagagtcagtgatgcccctaaaaccagacctgctggagcagtgaaaactctattaccgagatggacaccaacagttattgtagatcttcacaatggcagtcctgatatcaaagaggagagtaacagcagaccctggagacctcaatgtaacagcaacctttccacaatcatgggtcattttgatgccaacaataatatgaactggagcctggaaaggagtcagcccgtccaggcagtgaaccccccacataacatctctgcacatatgatcttaagaaatgggccattgatcacaaaccgggcaaacatgacagaaattaggcgccataaatctactgtttactgcagacagtacttcagtgagtctctgtcctgtggattcaagatgtgtcgattcaagcatgtgcctgtggacggagatgaaaagttctgtgttgaaactgtgatgcggttcatccaaaatccaacgtgtgtccagaaagcaggtgctgtatttacaggctactaccagaacaacccaccaggtgtgttcttctccatgccagtgtttgtgtcactcctctggtccctgctcaaagcctgcatggtgtctgatatcctctcagtccttagtgtcagcttggctcataagatagcgcctggccatgagttcctgctggccctgtttgacttggtgagagagaagggccttgtgggatttttacctcaactcatgcggctcacattcaagatggccagtggaggtctagtgctgagtttggattggtttgaaagtataaaaattactcctgagttccagcaggcaatccgttcgaactctcctgtttcagtgactgccaacctcaatgctccctttccagagtacctgaatctggcccaatccattgtggagatagagctttgtacgaagcaggaggactggagacggatgggaaaggtgttcaggtccatctgccaatccagccatcatcccaaccaagtggaacaaatcagtggccgcatcgccatagctctcctgtcagagagcaaagacaagctgtcactgccctttgctacctttgctgagacagtgtgtccgagtgagggtgacaccctgatccagagtttttttggcagaattggagtctcactcatgctaagatatcacaaaacacatcaatgggccaagggtcggcgggtggtggagatgctgtccctgtcaaaagtcagatactcaacgctgaagggtttgtttgggaatgaagacggagcttcacgctgctacttggtcactgtggcaaccgagcttttcctcctgagtggcagtgtggagggggctctgaacacgctacgagaaaacaaatggttcctgagttcgcactcatggccatgtgagcctgcagatctggatagtaggaagcatgtgttgatgcgcctggctgagaaaacttctcatcgggacacactggaggttctctgtaatctccctggaattaaaatgccaaatgacttgattgatatctccaggtacggccctctgtttgactctcatctacgagtgtgcatggacagacaagtccttcctgtagcctcagatacagtagacttcatgctctctcacaacctggcagttgaccatgcgatgcttcagattcttttccacaaacttggcaagcaaaaccattggctccgtgcacgggaagtcttcagacactctctgagtgtggggtactaccctggtgtgtctgccccccctggtttcatggcgttgatcgtcccctgtcatctgggggaggtggagctggctcttgcctttgagatgttcatcgctgtcaatgcagcggccatcctccaaatttcagagaccaccacatcttgcctcagcatcactctgaaacggactcaaagcagcgagagtgagtacctcttagctggtagccgcctcctctctgcagcttgtatccctcagcccaagctaatggttcactacacagaagtgaactcttcacaggagcaagttttcacacttgacattttctctgctcgacgatggctccgccacaatcatttgtgggcaaatgaagtgtggacacattgacccgaacacggttgttttcctgcactccctggaagcacttgattgattttctttgtacgaagttttaataagaagttgttcttgtccaaaacgtttgcttctgttgtttttcttaacgtcacagactgaaatgcaactgtctgtgtttgtatggaggatgtgtttgtgatgtcaaaagatgatctctattttgcagttgccatagttacactcaacaggagtcatcagcgttgatgtccctgaagtcaaggtccatgcatccatgtgtcaggaaactgatttctggccacattagagtcaaccaatatcatccgtcacctccagtggccttttcctgttttgttgaagatatgtggtttacctcttcatgctgccgcacctgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtctgt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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