GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-15 19:54:23, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_065921182            1886 bp    mRNA    linear   MAM 22-JUN-2024
DEFINITION  PREDICTED: Muntiacus reevesi vimentin (VIM), mRNA.
ACCESSION   XM_065921182
VERSION     XM_065921182.1
DBLINK      BioProject: PRJNA1126686
KEYWORDS    RefSeq.
SOURCE      Muntiacus reevesi (Reeves' muntjac)
  ORGANISM  Muntiacus reevesi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Cervidae; Muntiacinae; Muntiacus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089250) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963930625.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Muntiacus reevesi"
                     /mol_type="mRNA"
                     /db_xref="taxon:9886"
                     /chromosome="2"
     gene            1..1886
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 26 Proteins"
                     /db_xref="GeneID:136159226"
     CDS             165..1565
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_065777254.1"
                     /db_xref="GeneID:136159226"
                     /translation="
MSTRSVSSSSYRRMFGGPGTASRPSSTRSYVTTSTRTYSLGSALRPSTSRTLYTSSPGGVYATRSSAVRLRSGVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     polyA_site      1886
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cgcgcggggtccggtcctctgctactctcgcttcgggggtctccgcgccagagacgcagcagcgctccctctgcccacacccaccgcgccctcgcgctcgcctctcctcccggagccagtccgtgctaccgcagtcgcccagttcaccgccaccctctgcagccatgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgcgagccggccgagctccacccggagctacgtgaccacgtccacccgcacctacagcctgggcagcgcgctgcgcccctccaccagccgcaccctctacacctcgtcccccggtggcgtgtacgccacgcgctcctcggccgtgcgcctgcggagcggcgtgcccggcgtgaggctgctgcaggactcggtggacttctccttggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctgaccgaagacatcatgaggcttcgggagaagttgcaggaggagatgcttcagagggaggaagccgagagcactctgcagtctttcagacaggatgttgacaatgcctctttggcacgtcttgacctggagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcatgatgaggaaatccaggagcttcaggcccagattcaagaacagcacgtgcaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgatgtccgtcagcagtatgagagtgtggccgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgctgacctctctgaagctgctaaccgcaacaatgatgccctgcgccaggccaagcaggagtcgaatgagtaccgtcggcaggtgcagtctcttacctgcgaggtggatgcgctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaacttctctgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggcccgtcacctgcgtgaataccaagacctgctgaatgtcaagatggcgctcgacatcgagatcgccacctacaggaagctgctggaaggagaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattcactccctctggttgacacccattcaaaaaggacacttctgattaagacggtggaaaccagagatggacaggttatcaacgaaacttcccagcatcacgatgatctggaataaaaactgcacatactccgtgcagcaaaatactaccagcaagaaggaaaaaaaaaaaattcatatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagcgcaagatagatttggaataggaataagccctagttcttgaaccaacacccgtaaaagatttagagaaaagtttacaacataatctagtttaccgaagaagccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]