2025-04-23 15:33:16, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_064505278 2796 bp mRNA linear VRT 17-APR-2024 DEFINITION PREDICTED: Dromaius novaehollandiae ClpB family mitochondrial disaggregase (CLPB), mRNA. ACCESSION XM_064505278 VERSION XM_064505278.1 DBLINK BioProject: PRJNA1099263 KEYWORDS RefSeq. SOURCE Dromaius novaehollandiae (emu) ORGANISM Dromaius novaehollandiae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_088098) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036370855.1-RS_2024_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/12/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2796 /organism="Dromaius novaehollandiae" /mol_type="mRNA" /isolate="bDroNov1" /db_xref="taxon:8790" /chromosome="1" /sex="female" /tissue_type="blood" /dev_stage="adult" /geo_loc_name="USA: Bronx Zoo, New York" /lat_lon="40.8501 N 73.8767 W" /collection_date="2023-01-07" /collected_by="Bronx Zoo Vetinarian Team" gene 1..2796 /gene="CLPB" /note="ClpB family mitochondrial disaggregase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:112993483" CDS 93..2150 /gene="CLPB" /codon_start=1 /product="mitochondrial disaggregase" /protein_id="XP_064361348.1" /db_xref="GeneID:112993483" /translation="
MLGALAARPQPPALVWLLAARPWAARAARGAAAAAAGPRQFPAAAAGGQREPALSAALRGCGAAGRGRPAAAGLLRGAPAATAAGPGPATAFAGGTERRCGGGGDGGGRRSREGSGPRRAAPPAVVAAALAWCYAREHVSKEDALLEAARINNVSEVDRLLLEGTDVNARHKLGWTALMVAAINRNASVVKILLAANADPNLGDEFSSVYETAKEKGLHSLEVLVTREDDFNNRLNIRASFKGCTALHYAVLADDYVTVKLLLDGGANPLQKNEMGHTPLDYAREGEVMKLLKASETKFQEEQRRREIEERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYIHKDVKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLRQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEAMEMSKKRIAENLEDVQMTDKITISKQFKEKVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKKAKMRHNITLLWDREVMDVLADGYNLHYGARSIKHEVERRVVNQLAAAYEQDLLPRGCTLRITVEDSDKQLLKTKDSSSPGADKAKMPTLRLEIVEKDSKSRKLNIQAPLNPENITYFL"
polyA_site 2796 /gene="CLPB" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ctcgcctcggcgggctgccggcagccgccatcttggctcggccgcctccgcggaggggggggaaggcgggcgcggcggcgaggcagcggacgatgctgggcgccctggcggcccgcccgcagccgccggcgctggtgtggctcctcgcagcgcggccctgggcggcgcgggcggcccgcggcgctgcggcggcggcggcggggccgcggcagttcccggcggcggccgccggggggcagcgcgagcccgcgctgagcgcggcgctgcggggctgcggcgcggccggcagggggcgccccgcggcggcggggctgctccggggggcgcccgcggcgacggcggccgggccgggccccgcgacggccttcgcgggaggcaccgagcggcgctgcggcggcggaggagacggcggcgggcgccggagccgagaggggagcgggccgcggcgagctgcgccgcccgccgtcgtcgccgccgcgctggcctggtgctacgcccgggagcacgtgtccaaggaagatgctctgctggaagccgcgaggatcaacaatgtttctgaagtcgaccggttattgctagaaggcacggatgtgaacgcgaggcacaagcttggctggactgctctcatggtggcagctatcaacagaaatgccagtgtggtgaagatcctgctcgcagccaatgctgatccaaaccttggagatgagttcagcagcgtgtatgagactgccaaggaaaaaggcctccattctttagaagtccttgtaacccgggaggatgacttcaacaaccgcttgaacatcagagccagcttcaagggttgcacagctctacactatgcagtacttgctgatgactacgtgacagtcaaattattgctggatggaggtgccaaccccctgcagaagaatgagatgggacacacacccctggattatgcccgcgaaggggaggtcatgaaacttttgaaagcgtcagagacaaagttccaggaagagcagcgcaggagagagatagaagaacgccggaggtttcccctggagcagcggctaaaagagcacatcattggtcaggagagcgcgatagcaaccgtgggagcagctattcggaggaaggaaaatggctggtatgatgaagagcacccgctggtctttcttttcttgggatcatctggaataggtaaaacagagctggccaaacagacagccaagtacatacataaggatgtcaaaaagggtttcattagactggacatgtcagagttccaggaaaggcacgaggtcgccaagtttattggctctccgcctggctacgtgggccatgaagagggtgggcagctcaccaaaaagctgaggcagtgtccaaatgctgtggtgctctttgacgaggtcgacaaagcccacccagatgtcctcaccataatgctgcagctgttcgatgaaggcagactgacagacgggaaaggaaaaaccattgactgcaaggatgccatctttatcatgacctccaacgtggcgagtgatgagatagcccagcacgctctgcagctcaggcaagaggccatggaaatgagcaagaaaaggatcgcagaaaacttagaggatgtccagatgaccgacaagataaccatctctaagcaattcaaggagaaggttattcgcccgatcttaaaggctcacttccgacgggacgagtttctggggaggatcaatgagattgtgtatttcctccctttctgccactcggagctcatccagcttgtcaacaaggagctgaatttttgggccaagaaggccaaaatgaggcacaatatcaccctgctttgggacagggaggttatggacgtgctggctgacggctacaacttgcactatggcgcccggtctatcaaacacgaggttgaacggcgtgtcgtgaaccagctagcagctgcctacgagcaggacctgctgccgaggggctgcaccctgaggatcacggtggaggattcggacaagcagctgctgaaaaccaaagacagctcatcccctggagcggataaagcgaagatgccaaccctgcgactggagatagtggagaaagacagcaaatcccgaaaactgaacatccaagcacctttgaaccctgaaaatattacttacttcttataggcacgaggaccactctgcgagcagctgccgcctgtgagacgctgcgggctgtgctgctcggcaataaaataccgtgcgactcggagtgtccagtctggccacaccagtgagcacaggccactgctgactgtcagagcagggcgtgagctggggcaggggcgaagctgggctctcgtgagctcctcctgctcttcgggaaggggacgcaggcaggcgggaccctcgcgtgacgggaccacgcgtctttattctggggtaggcacagaggtgaggagcagctacgaaccagggaggtgctgtgctgcggttgtggggacatagcaaataggtggagagtagtgggatttcgccgtagaagcgcttggcacaagagaaggtggaggagtattttaagaagaggggaaagcagatttcaggttgtacagcagccggggagttcagctctgataaggcttgctgttccctaacgggcggctgggttccctcactgcggaggctgggttcgctggggttggactgctgctggaagaggggtaggacagggcctgcgtgtgtgacagcttgattttgaaagccaccaggcactctctgactctgtatttcgccctcctcttaatttattgcaataaatgcagcgtgcacgaga
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DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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