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2025-04-22 02:47:08, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_052745696            1404 bp    mRNA    linear   ROD 25-FEB-2023
DEFINITION  PREDICTED: Peromyscus californicus insignis alkaline ceramidase 1
            (Acer1), mRNA.
ACCESSION   XM_052745696
VERSION     XM_052745696.1
DBLINK      BioProject: PRJNA910479
KEYWORDS    RefSeq.
SOURCE      Peromyscus californicus insignis
  ORGANISM  Peromyscus californicus insignis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Neotominae; Peromyscus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026294492) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_007827085.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/24/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1404
                     /organism="Peromyscus californicus insignis"
                     /mol_type="mRNA"
                     /strain="IS"
                     /sub_species="insignis"
                     /db_xref="taxon:564181"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="liver"
     gene            1..1404
                     /gene="Acer1"
                     /note="alkaline ceramidase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins"
                     /db_xref="GeneID:128115223"
     CDS             1..822
                     /gene="Acer1"
                     /codon_start=1
                     /product="alkaline ceramidase 1"
                     /protein_id="XP_052601656.1"
                     /db_xref="GeneID:128115223"
                     /translation="
MHQHQSRAKMPSVFAYQSSEVDWCESNFQHSELVAEFYNTFSNVFFLIFGPLMMFLMHPYAQKRTWAIYGVSVLFMVIGLFSMYFHMTLSFVGQLLDEISILWLLASGYSVWMPRCYFPKFTKGSRYYFSCFVILTTIISTFLTFVKPTINAYALNSIAIHIVYIVHQEYKKTSDGDLRHLIEMSVILWAVALTSWISDRVLCSFWQRIHFFYLHSIWHVLISLTFPYGIVTMALVDAKYEMPGETLKVHYWPRDSWFIGLPYVEIQDNDKSC"
     misc_feature    43..795
                     /gene="Acer1"
                     /note="Region: Ceramidase; pfam05875"
                     /db_xref="CDD:461766"
ORIGIN      
atgcatcagcaccagagcagagcaaagatgcccagcgtctttgcctaccagagctctgaggtggattggtgcgagagcaatttccagcactcggagttggtggctgagttctacaatacgttcagcaatgtgttcttcctcatctttggacccctcatgatgttcctcatgcatccatatgctcagaagcgtacctgggccatctacggggtctcagtcctcttcatggtcataggtctgttctccatgtatttccacatgacactcagcttcgtggggcagctgctcgatgagatctccatcctgtggttgctggccagtggctacagcgtgtggatgccccgttgctacttccccaagttcaccaaggggagcaggtactacttcagctgctttgtgattctgaccactataatcagcaccttcttgacatttgtgaagcccacgatcaatgcatacgccctcaacagcatcgccatacacattgtctacattgtgcaccaagagtacaagaagaccagcgatggggatcttcggcatctgattgagatgtctgtgatcttatgggctgtcgcgctgacaagctggatcagtgaccgtgtactttgcagtttctggcagcggattcacttcttctacctgcatagcatttggcatgtcctcataagcctcaccttcccttatggtatcgtgactatggccctggtggatgccaagtatgagatgccaggtgaaaccctcaaagtccactactggccccgggatagttggttcatcgggctgccctatgtggagatccaggacaatgacaagagctgctgagcccgcggagtctctgactatcagtctcctgtgctctgaggacagaggaccaggacttcagctgggacacttgtggtcacgtctcccttccctcatccacactccctgcccggctctgttgccacaagataaaccttcttgtggctctgagtactagtttggtgactgaggggcgggggctgcctggtgtgctggataactggcccgtgtcctccttctgcctgaggaaccacagcttctccacggccattggtgtggtggtgcatagatgggtgaatgggtaggtgtgtgtctgatacagtacctgctggaagcatgatgcttgctctctagcatcttgcacatctgggactatttatgagtgttacagattcaacttgggtcatgacaatgttctcggaaagtagggaggatcctagagagcaatatatatatatatattgtcctctttgaaccaccatgtaccctcagagcacggtggcggcaaacacaggagccatgagggaggaaaacagagggccaacctgggtgacattatggaacagggttgtgagaggggagcatggtgaccagtctaggcac
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]